Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f12
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocar...    28   5.9  
Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical
           protein M01B12.4c protein.
          Length = 678

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 34/125 (27%), Positives = 46/125 (36%)
 Frame = +3

Query: 339 QGQDA*TQEREQGDSLRACHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKD 518
           Q Q    Q  E  DS +A     + T ST   + P   I+E      +      L  ++ 
Sbjct: 484 QQQQRLVQFDEDTDSGKASPTS-SETSSTTDEVTPRGAIEEEAAAEKITAPRV-LPIVRS 541

Query: 519 HEDSVIGMPTCSIEQAEAVRQYYAAFPALKKGQESPLQYYLPPPAWCRKTVTEVTAKMQC 698
            ED  I      I ++E  +   AA  A  +G  SP+   LPP A   K  T        
Sbjct: 542 AED--IARKEKEIRESEERKSRLAAILAKSRGMASPMTNTLPPTADDIKDSTPAVTSASL 599

Query: 699 ELSPS 713
            L PS
Sbjct: 600 PLLPS 604


>Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical
           protein C41G7.5b protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 390 PAGYRP-ALSLVFTHPALDSVCRYQTPSSHINL 295
           P G+ P A  LV  HP +     Y TPS+H +L
Sbjct: 506 PHGFTPDAQKLVPPHPQMSHFTEYPTPSTHHDL 538


>Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical
           protein C41G7.5a protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 390 PAGYRP-ALSLVFTHPALDSVCRYQTPSSHINL 295
           P G+ P A  LV  HP +     Y TPS+H +L
Sbjct: 548 PHGFTPDAQKLVPPHPQMSHFTEYPTPSTHHDL 580


>Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical
           protein R08D7.6c protein.
          Length = 856

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 247 RIDLYTRPTAIVKWTHEIYVR*WCLIT--TDTIKGRMRKHKRESRAIAC 387
           R+    RP     W+H   V  +C +T  TD I+  +   +R S  IAC
Sbjct: 408 RVSAGYRPVPYHNWSHAFAVTHFCWLTLRTDAIRRALSDMERLSLLIAC 456


>Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical
           protein R08D7.6b protein.
          Length = 734

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 247 RIDLYTRPTAIVKWTHEIYVR*WCLIT--TDTIKGRMRKHKRESRAIAC 387
           R+    RP     W+H   V  +C +T  TD I+  +   +R S  IAC
Sbjct: 411 RVSAGYRPVPYHNWSHAFAVTHFCWLTLRTDAIRRALSDMERLSLLIAC 459


>Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical
           protein R08D7.6a protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 247 RIDLYTRPTAIVKWTHEIYVR*WCLIT--TDTIKGRMRKHKRESRAIAC 387
           R+    RP     W+H   V  +C +T  TD I+  +   +R S  IAC
Sbjct: 411 RVSAGYRPVPYHNWSHAFAVTHFCWLTLRTDAIRRALSDMERLSLLIAC 459


>AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocarbon
           receptor orthologAHR-1 protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 390 PAGYRP-ALSLVFTHPALDSVCRYQTPSSHINL 295
           P G+ P A  LV  HP +     Y TPS+H +L
Sbjct: 548 PHGFTPDAQKLVPPHPQMSHFTEYPTPSTHHDL 580


>Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical
           protein B0464.2 protein.
          Length = 1150

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +3

Query: 570 AVRQYYAAFPALKKGQESPLQYYLPPPAWCRKTVTEVTAKMQCELSPSKD 719
           AV+ Y +A    +K  +S LQ+YL    +    + E    ++C +    D
Sbjct: 731 AVQMYSSAMKKFRKENDSTLQHYLAKAYYRANMLNEAKEALECAMLDQLD 780


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,876,184
Number of Sequences: 27780
Number of extensions: 385721
Number of successful extensions: 944
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)