Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f11
         (291 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0697 - 5389071-5389487,5390301-5390390,5390472-5390536,539...    28   1.4  
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412...    27   1.9  
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879...    27   2.5  
01_06_0637 + 30763657-30763858,30765600-30766261                       26   4.4  
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510...    26   4.4  
01_04_0141 + 16618916-16619265,16619400-16619418                       26   5.8  
03_02_0110 - 5678057-5678794,5679279-5679470,5679971-5680087,568...    25   7.7  

>01_01_0697 -
           5389071-5389487,5390301-5390390,5390472-5390536,
           5391106-5391176,5391297-5391335,5392938-5393350
          Length = 364

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 92  PSVLLSSYTAPVAYTGPV 145
           P+ LL+ Y+ P+ YTGP+
Sbjct: 255 PAALLAKYSDPLVYTGPI 272


>01_01_0562 +
           4126368-4128196,4128517-4128715,4128827-4128886,
           4129129-4129233,4129987-4130127,4130223-4130285,
           4130925-4131152,4131250-4131333,4132000-4132157,
           4132252-4132777,4133641-4133700,4133904-4134026,
           4134906-4135181,4135282-4135347,4135500-4135631,
           4135977-4136798,4137026-4137306,4137564-4137796,
           4138022-4138260,4138367-4138558,4138808-4139080,
           4139186-4139332
          Length = 2078

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 100 PSQLVHGSRRIHRARRGCLHXSAG 171
           P  L+H SRR    + GC+H S G
Sbjct: 14  PPPLLHPSRRRRHRQGGCIHTSPG 37


>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
            87962-88042,88133-88237,88338-88568,88665-90197,
            90660-90752,91477-92887,93184-93305,93479-93718,
            94521-94682,94770-94937,95025-95141,95266-95376,
            95919-96506
          Length = 1787

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 142  GPGVCDGSRVRA--EKDAGLSRREGQEASEDEQFE 44
            GP   + +R +A  EKD  + R  G  +SEDE+ +
Sbjct: 944  GPNTRNATRRKAASEKDLEMKRAHGDSSSEDEELD 978


>01_06_0637 + 30763657-30763858,30765600-30766261
          Length = 287

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 120 LPSH-TPGPSRLPTXLRWPTQR 182
           LPSH +P PS LP+  R PT R
Sbjct: 29  LPSHLSPSPSLLPSPKRTPTCR 50


>01_06_0192 +
           27347369-27348826,27349124-27349264,27349350-27351081,
           27353739-27354606,27354784-27355957
          Length = 1790

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 121 SRVRAEKDAGLSRREGQEASEDEQFE 44
           SR RA  +AG++R  G+E  E+E  E
Sbjct: 105 SRGRARGEAGVAREIGEEEEEEEDDE 130


>01_04_0141 + 16618916-16619265,16619400-16619418
          Length = 122

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 154 GSRDGPGVCDGSRV-RAEKDAGLSRREGQEASEDEQFEHXVDCQW 23
           G RDG   CDG R+   + D+G  + +G+  +         +C W
Sbjct: 47  GWRDGGDRCDGQRLGGGDCDSGADQCDGRRGTSSRMARQR-ECYW 90


>03_02_0110 -
           5678057-5678794,5679279-5679470,5679971-5680087,
           5680331-5680402,5680444-5680569,5681086-5681445,
           5681944-5682057,5682158-5682199
          Length = 586

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 193 WCXVR*VGQRSXVGSRDGPGVCDGSRVRAEKDAGLSRREGQEASED 56
           WC     G      S + P + DG R +   D GLS  +G + S D
Sbjct: 62  WCAATNPGDPGIFKSAEHPKLKDGRRSQKNSDHGLS--QGGKMSSD 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,979,612
Number of Sequences: 37544
Number of extensions: 43444
Number of successful extensions: 219
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)