Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29f11
(291 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC117331-1|AAI17332.1| 346|Homo sapiens selenoprotein V protein. 29 3.6
AY324825-1|AAP85542.1| 346|Homo sapiens selenoprotein V protein. 29 3.6
BC098419-1|AAH98419.1| 668|Homo sapiens TBC1D10B protein protein. 28 6.3
BC093816-1|AAH93816.1| 533|Homo sapiens TBC1 domain family, mem... 28 6.3
BC093814-1|AAH93814.1| 533|Homo sapiens TBC1 domain family, mem... 28 6.3
BC072453-1|AAH72453.2| 533|Homo sapiens TBC1 domain family, mem... 28 6.3
BC063112-1|AAH63112.1| 622|Homo sapiens TBC1D10B protein protein. 28 6.3
BC050523-1|AAH50523.2| 385|Homo sapiens TBC1D10B protein protein. 28 6.3
AL117408-1|CAB55908.1| 233|Homo sapiens hypothetical protein pr... 28 6.3
AK023192-1|BAB14454.1| 533|Homo sapiens protein ( Homo sapiens ... 28 6.3
AK002101-1|BAA92086.1| 289|Homo sapiens protein ( Homo sapiens ... 28 6.3
>BC117331-1|AAI17332.1| 346|Homo sapiens selenoprotein V protein.
Length = 346
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 90 SPASFSARTRLPSHTPGPSRLPTXLRWPT 176
+PA SART P+R PT LR PT
Sbjct: 7 TPAPSSARTSTSVRASTPTRTPTPLRTPT 35
>AY324825-1|AAP85542.1| 346|Homo sapiens selenoprotein V protein.
Length = 346
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 90 SPASFSARTRLPSHTPGPSRLPTXLRWPT 176
+PA SART P+R PT LR PT
Sbjct: 7 TPAPSSARTSTSVRASTPTRTPTPLRTPT 35
>BC098419-1|AAH98419.1| 668|Homo sapiens TBC1D10B protein protein.
Length = 668
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 97 RPSQLVHGSRRIHRARR 147
RPS+ +HGSR IH RR
Sbjct: 491 RPSRRLHGSRAIHEERR 507
>BC093816-1|AAH93816.1| 533|Homo sapiens TBC1 domain family, member
10B protein.
Length = 533
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 97 RPSQLVHGSRRIHRARR 147
RPS+ +HGSR IH RR
Sbjct: 356 RPSRRLHGSRAIHEERR 372
>BC093814-1|AAH93814.1| 533|Homo sapiens TBC1 domain family, member
10B protein.
Length = 533
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 97 RPSQLVHGSRRIHRARR 147
RPS+ +HGSR IH RR
Sbjct: 356 RPSRRLHGSRAIHEERR 372
>BC072453-1|AAH72453.2| 533|Homo sapiens TBC1 domain family, member
10B protein.
Length = 533
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 97 RPSQLVHGSRRIHRARR 147
RPS+ +HGSR IH RR
Sbjct: 356 RPSRRLHGSRAIHEERR 372
>BC063112-1|AAH63112.1| 622|Homo sapiens TBC1D10B protein protein.
Length = 622
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 97 RPSQLVHGSRRIHRARR 147
RPS+ +HGSR IH RR
Sbjct: 445 RPSRRLHGSRAIHEERR 461
>BC050523-1|AAH50523.2| 385|Homo sapiens TBC1D10B protein protein.
Length = 385
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 97 RPSQLVHGSRRIHRARR 147
RPS+ +HGSR IH RR
Sbjct: 208 RPSRRLHGSRAIHEERR 224
>AL117408-1|CAB55908.1| 233|Homo sapiens hypothetical protein
protein.
Length = 233
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 97 RPSQLVHGSRRIHRARR 147
RPS+ +HGSR IH RR
Sbjct: 56 RPSRRLHGSRAIHEERR 72
>AK023192-1|BAB14454.1| 533|Homo sapiens protein ( Homo sapiens
cDNA FLJ13130 fis, clone NT2RP3002972, weakly similar to
Halocynthia roretzi mRNA for HrPET-1. ).
Length = 533
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 97 RPSQLVHGSRRIHRARR 147
RPS+ +HGSR IH RR
Sbjct: 356 RPSRRLHGSRAIHEERR 372
>AK002101-1|BAA92086.1| 289|Homo sapiens protein ( Homo sapiens
cDNA FLJ11239 fis, clone PLACE1008533. ).
Length = 289
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 97 RPSQLVHGSRRIHRARR 147
RPS+ +HGSR IH RR
Sbjct: 112 RPSRRLHGSRAIHEERR 128
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,199,191
Number of Sequences: 237096
Number of extensions: 234758
Number of successful extensions: 1111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 76,859,062
effective HSP length: 73
effective length of database: 59,551,054
effective search space used: 1369674242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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