Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29f11
(291 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT001295-1|AAN71050.1| 536|Drosophila melanogaster AT11052p pro... 32 0.10
AE013599-3570|AAM68240.2| 539|Drosophila melanogaster CG30416-P... 32 0.10
AF233659-1|AAF42939.1| 1530|Drosophila melanogaster RECQ4 protein. 28 1.7
AY122179-1|AAM52691.1| 315|Drosophila melanogaster LD37139p pro... 26 9.0
AY069217-1|AAL39362.1| 849|Drosophila melanogaster GH26442p pro... 26 9.0
AJ131564-1|CAB39165.1| 313|Drosophila melanogaster nucleolar pr... 26 9.0
AE014297-4242|AAF56799.1| 315|Drosophila melanogaster CG10009-P... 26 9.0
AE014297-136|AAO41501.1| 849|Drosophila melanogaster CG31534-PB... 26 9.0
AE014297-135|AAF52102.3| 889|Drosophila melanogaster CG31534-PA... 26 9.0
>BT001295-1|AAN71050.1| 536|Drosophila melanogaster AT11052p
protein.
Length = 536
Score = 32.3 bits (70), Expect = 0.10
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 93 PASFSARTRLPSHTPGPSRLPTXLRWPTQ 179
P+ ++LPS TP PSRLPT + P+Q
Sbjct: 325 PSDIPPPSQLPSGTPPPSRLPTSITPPSQ 353
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 93 PASFSARTRLPSHTPGPSRLPTXLRWPTQ 179
P+ ++LPS P PS+LP+ + P+Q
Sbjct: 295 PSGIPPPSQLPSDIPPPSQLPSDIPPPSQ 323
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 93 PASFSARTRLPSHTPGPSRLPTXLRWPTQ 179
P+ ++LPS P PS+LP+ + P+Q
Sbjct: 305 PSDIPPPSQLPSDIPPPSQLPSDIPPPSQ 333
>AE013599-3570|AAM68240.2| 539|Drosophila melanogaster CG30416-PA
protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.10
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 93 PASFSARTRLPSHTPGPSRLPTXLRWPTQ 179
P+ ++LPS TP PSRLPT + P+Q
Sbjct: 325 PSDIPPPSQLPSGTPPPSRLPTSITPPSQ 353
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 93 PASFSARTRLPSHTPGPSRLPTXLRWPTQ 179
P+ ++LPS P PS+LP+ + P+Q
Sbjct: 295 PSGIPPPSQLPSDIPPPSQLPSDIPPPSQ 323
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 93 PASFSARTRLPSHTPGPSRLPTXLRWPTQ 179
P+ ++LPS P PS+LP+ + P+Q
Sbjct: 305 PSDIPPPSQLPSDIPPPSQLPSDIPPPSQ 333
>AF233659-1|AAF42939.1| 1530|Drosophila melanogaster RECQ4 protein.
Length = 1530
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 88 SRREGQEASEDEQFEHXVDCQWTTSELN 5
S + QE+SEDE+ + D W++ E++
Sbjct: 704 SEEDDQESSEDEEVQQHPDPNWSSDEMD 731
>AY122179-1|AAM52691.1| 315|Drosophila melanogaster LD37139p
protein.
Length = 315
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 61 EDEQFEHXVDCQWTTSE 11
ED+QFEH CQ SE
Sbjct: 153 EDDQFEHQASCQVLESE 169
>AY069217-1|AAL39362.1| 849|Drosophila melanogaster GH26442p
protein.
Length = 849
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 136 GVCDGSRVRAEKDAGLSRREGQEASE 59
G+CD S +D+G+S +++SE
Sbjct: 333 GLCDSSDTGESRDSGVSENHSRQSSE 358
>AJ131564-1|CAB39165.1| 313|Drosophila melanogaster nucleolar
protein, putative protein.
Length = 313
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 61 EDEQFEHXVDCQWTTSE 11
ED+QFEH CQ SE
Sbjct: 153 EDDQFEHQASCQVLESE 169
>AE014297-4242|AAF56799.1| 315|Drosophila melanogaster CG10009-PA
protein.
Length = 315
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 61 EDEQFEHXVDCQWTTSE 11
ED+QFEH CQ SE
Sbjct: 153 EDDQFEHQASCQVLESE 169
>AE014297-136|AAO41501.1| 849|Drosophila melanogaster CG31534-PB,
isoform B protein.
Length = 849
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 136 GVCDGSRVRAEKDAGLSRREGQEASE 59
G+CD S +D+G+S +++SE
Sbjct: 333 GLCDSSDTGESRDSGVSENHSRQSSE 358
>AE014297-135|AAF52102.3| 889|Drosophila melanogaster CG31534-PA,
isoform A protein.
Length = 889
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 136 GVCDGSRVRAEKDAGLSRREGQEASE 59
G+CD S +D+G+S +++SE
Sbjct: 333 GLCDSSDTGESRDSGVSENHSRQSSE 358
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,465,864
Number of Sequences: 53049
Number of extensions: 65100
Number of successful extensions: 319
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 485663193
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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