Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f11
         (291 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101305-7|AAF98591.1|  279|Caenorhabditis elegans Hypothetical ...    25   6.8  
Z81130-6|CAB03419.4|  312|Caenorhabditis elegans Hypothetical pr...    25   9.1  

>AF101305-7|AAF98591.1|  279|Caenorhabditis elegans Hypothetical
           protein C04F5.8 protein.
          Length = 279

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 141 PSRLPTXLRWPTQ 179
           PS+ P+ LRWPT+
Sbjct: 24  PSKAPSKLRWPTE 36


>Z81130-6|CAB03419.4|  312|Caenorhabditis elegans Hypothetical
           protein T23G11.7b protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 87  LSPASFSARTRLPSHTP 137
           + P S+S+   LPSHTP
Sbjct: 226 IPPPSYSSTPNLPSHTP 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,219,518
Number of Sequences: 27780
Number of extensions: 32501
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)