Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29f10
(240 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 26 0.76
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 25 1.3
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 24 2.3
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho... 23 4.1
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 23 5.4
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 23 7.1
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 23 7.1
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 23 7.1
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 23 7.1
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me... 22 9.4
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 22 9.4
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 22 9.4
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 22 9.4
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 0.76
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -3
Query: 133 RESLIKKMGRTNFLCKRKNKN-FVSLHVNVQN 41
R L+ +GR F+CK K++ F+ + VN+++
Sbjct: 454 RVMLLTDVGRCAFVCKGKHERLFIEMEVNLKD 485
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 1.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 136 IRESLIKKMGRTNFLCKRK 80
+R+ +IKK NFLC K
Sbjct: 171 VRDKIIKKCAEVNFLCIHK 189
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 24.2 bits (50), Expect = 2.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 96 KFVLPIFLINDSRIYYEASLSFFFGL 173
+FV L N ++YY SL FF L
Sbjct: 547 RFVAASLLDNTVKVYYLDSLKFFLNL 572
>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
phospholipase C |Schizosaccharomyces pombe|chr
2|||Manual
Length = 424
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 62 FACKRPEYAF*RPQTCTVK 6
F KR +Y F P TC K
Sbjct: 251 FVAKRLDYVFHSPSTCEAK 269
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 146 SFLIFFFRTVNYCGNI 193
SFL+F+F +CG I
Sbjct: 243 SFLVFYFVLALFCGGI 258
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -3
Query: 130 ESLIKKMGRTNFLCKRKNKNFVSLHVNVQNMHF 32
++L+K + ++LCK+ V+ +V+ QNM F
Sbjct: 144 QALVKAQDKYHYLCKK-----VNYYVSQQNMLF 171
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -3
Query: 94 LCKRKNKNFVSLHVNVQNMHFSVPKL 17
LC++ N+N ++ + ++ FSVP +
Sbjct: 495 LCEKLNRNCMNAQSLMSSLGFSVPPM 520
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +3
Query: 42 FWTFTCKDTKFLFFRLHKK 98
FW FT K F LH K
Sbjct: 422 FWLFTSKPFAFYLEHLHNK 440
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 22.6 bits (46), Expect = 7.1
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 117 KKWGERIFCANEKTKTSCLCM*TSRICILAS-PNLYCKAK 1
+ W + A++ +KT L + T+ C+L S +LY K +
Sbjct: 188 RTWMNTLKIASQASKTELLIVGTAYACMLISIVSLYLKMR 227
>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +3
Query: 45 WTFTCKDTKFLFFRLHK 95
WT+ CK+ K L+ + K
Sbjct: 35 WTWICKELKLLYPEISK 51
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3
Query: 73 NFVSLHVNVQNMH 35
NF S+ +N+Q+MH
Sbjct: 24 NFESIRINLQHMH 36
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 44 LDVYMQRHEVFVFSFAQKIRSPHFFN 121
L+VY RH V + ++K+ SP ++
Sbjct: 497 LEVYPIRHSVSIEMPSEKLLSPRLYS 522
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -3
Query: 94 LCKRKNKNFVSLHVNVQNMHFS 29
LC +F H +V N+HF+
Sbjct: 15 LCNHSVPSFPPFHSSVANIHFT 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,005,556
Number of Sequences: 5004
Number of extensions: 18654
Number of successful extensions: 46
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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