Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f10
         (240 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180...    26   3.7  
08_02_1022 + 23707993-23708528,23708620-23708706,23708807-237088...    26   4.9  
06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137...    25   8.5  

>01_03_0145 -
           13116302-13116958,13117365-13117430,13117786-13118065,
           13118283-13119028
          Length = 582

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 55  HAKTRSFCFFVCTKNSFSPFF*LMIRVFITK 147
           H K  SFCF VC+K     F  L  + FI+K
Sbjct: 84  HLKNNSFCFQVCSKQ--VGFHILSFKNFISK 112


>08_02_1022 +
          23707993-23708528,23708620-23708706,23708807-23708863,
          23708955-23709261,23709545-23709631,23709720-23709767
          Length = 373

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 20 FGDAKMHILDVYMQRHEVFVFSFA 91
          FG  K H+L VY+QR  + +  FA
Sbjct: 13 FGAKKYHMLGVYLQRSWLVLLMFA 36


>06_01_0175 -
           1371089-1371706,1371812-1371994,1372069-1372324,
           1372407-1372976,1373423-1373529,1373664-1374136,
           1374279-1374372
          Length = 766

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 102 VLPIFLINDSRIYYEASLSFFFGL*ITVAT 191
           V  I +I   R++Y  +LSFF  L + + T
Sbjct: 159 VYAIHVITGVRVFYGKTLSFFISLLVVLTT 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,605,340
Number of Sequences: 37544
Number of extensions: 90520
Number of successful extensions: 176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)