Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f10
         (240 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical p...    27   1.3  
AC087081-16|AAG37970.1|  252|Caenorhabditis elegans Hypothetical...    27   1.8  
Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical pr...    27   2.3  
U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    27   2.3  
U70850-2|AAB09123.1|  229|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical ...    26   4.1  
AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical ...    26   4.1  

>Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical
           protein T07C5.2 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 151 PYLFFSDCKLLWQHYKLISK*KSRLP 228
           P+ FF DCK  W  YK  S  + RLP
Sbjct: 37  PWSFFGDCKHNWDCYKESSN-RQRLP 61


>Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical
           protein Y41E3.15 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = +3

Query: 24  GTLKCIFWTFTCKDTKFLFFRLHKKFVLPIF--LINDSRIYYEASLSFFFG 170
           GT+    W  +C  T FLF        LP +  LI     Y+   LS  +G
Sbjct: 111 GTIVLTTWCTSCACTLFLFINRIVNITLPQYSDLIEAKLAYFSIILSIIYG 161


>AC087081-16|AAG37970.1|  252|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.3 protein.
          Length = 252

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 134 YLLRSFLIFFFRTVNYCGNIIN*FQNKNL 220
           Y+L SF + +F  V Y  NII  F+N  L
Sbjct: 9   YVLYSFFLVYFIAVAYAFNIILMFRNNEL 37


>Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical
           protein F46B6.2 protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 30  LKCIFWTF-TCKDTKFLFFRLHKKFVLPIFLINDSRIYYEASLSFFF 167
           L C   TF +  +TK   +  H + V+ IF+I  S  +     +FFF
Sbjct: 161 LICTLLTFYSATETKIRLYSYHYQVVISIFIIIVSFFHLRYCCTFFF 207


>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 82  FVCTKNSFSPFF*LMIRVFITKLPYLFFSDCKLLW 186
           F  +     PF    +  FIT +P++F + C   W
Sbjct: 173 FAASAQHLHPFELFFVGTFITTIPWIFPTHCLTYW 207


>U70850-2|AAB09123.1|  229|Caenorhabditis elegans Hypothetical
           protein F28F9.2 protein.
          Length = 229

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 37  AYSGRLHAKTRSFCFFVCTKNSFSPFF*LMIRVF-ITKLPYLFFSD 171
           A  G L    R  C  V  K S  PF  L + +F I  L +LFF D
Sbjct: 132 ALVGELSLAVRMMCRLVRLKQSL-PFLVLWLIIFGIATLVHLFFED 176


>AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical
           protein Y39C12A.7 protein.
          Length = 324

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 70  SFCFFVCTKNSFSPFF*LMIRVFITKLPYLFFSDCKLLWQH 192
           S  F    KN F   F  +  +FI   PYL + +    WQH
Sbjct: 221 SLSFTASEKNIFLLSFDTIYTIFILVCPYLHYKN-NTTWQH 260


>AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical
           protein Y9C9A.8 protein.
          Length = 666

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 18  SLGTLKCIFWTFTCKDTKFLFFRLHKKFVLPIFLINDSRIYYEASLSFFFGL 173
           ++GT+ C+    T     FLFF +   F  P+F IN  +  +   ++FF+ +
Sbjct: 167 TIGTI-CLGSIMTAIPMIFLFFPIGALFTAPVFGINMEK--FSFLVTFFYSM 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,522,654
Number of Sequences: 27780
Number of extensions: 103890
Number of successful extensions: 250
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)