Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f08
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   219   1e-57
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   208   4e-54
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   120   9e-28
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...   100   1e-21
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    44   1e-04
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    36   0.032
Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF003386-7|AAB54258.2|  412|Caenorhabditis elegans Hypothetical ...    29   4.9  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  219 bits (536), Expect = 1e-57
 Identities = 101/188 (53%), Positives = 132/188 (70%)
 Frame = +1

Query: 217 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 396
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 397 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 576
             +A+  FK+L+KYRPE+                         RPNT+R G NT+T+LVE
Sbjct: 90  SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149

Query: 577 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 756
            ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG +V RKT   +AL +V 
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVN 209

Query: 757 SGDRASFS 780
             D+++ +
Sbjct: 210 PEDKSALN 217


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  208 bits (507), Expect = 4e-54
 Identities = 101/188 (53%), Positives = 132/188 (70%)
 Frame = +1

Query: 217 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 396
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 397 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 576
             +A+  FK+L+KYRPE+                         RPNT+R G NT+T+LVE
Sbjct: 90  SQSARQAFKLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRLVE 129

Query: 577 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 756
            ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG +V RKT   +AL +V 
Sbjct: 130 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVN 189

Query: 757 SGDRASFS 780
             D+++ +
Sbjct: 190 PEDKSALN 197


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  120 bits (290), Expect = 9e-28
 Identities = 52/78 (66%), Positives = 65/78 (83%)
 Frame = +1

Query: 217 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 396
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192

Query: 397 KTTAKGLFKILEKYRPET 450
             +A+  FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score =  100 bits (239), Expect = 1e-21
 Identities = 43/60 (71%), Positives = 51/60 (85%)
 Frame = +1

Query: 217 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 396
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 21/56 (37%), Positives = 36/56 (64%)
 Frame = +1

Query: 538 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 705
           ++ G N  TK + +  ++++V+A D +P+E++L LP LC    VPY  V+ K+ LG
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +1

Query: 535 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-AL 711
           T+R G   V K + + +  + ++A +V PI++   +P +C +  +PY  +  + +LG A+
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127

Query: 712 VHRK 723
            HR+
Sbjct: 128 GHRR 131


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -2

Query: 492 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 373
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical
           protein F28C6.4a protein.
          Length = 745

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 24  SNLFVSAIFAESLVYDLGHVSFRGL 98
           ++LF+ ++++  +VYD+ HV F GL
Sbjct: 717 NHLFIWSVYSPKVVYDMAHVIFFGL 741


>AF003386-7|AAB54258.2|  412|Caenorhabditis elegans Hypothetical
           protein F59E12.8 protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 28  IFLFRPFSPKVWYTI*VTYLFVA 96
           +FLF PFS  VW  + +T L VA
Sbjct: 53  VFLFHPFSTTVWLLLSLTVLVVA 75


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +2

Query: 365 LRSTNLPRHWTRLQLRA 415
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,589,020
Number of Sequences: 27780
Number of extensions: 310847
Number of successful extensions: 916
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)