Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f07
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.10 |tim16||TIM23 translocase complex subunit Tim16|Schiz...    81   2e-16
SPAC824.06 |tim14||TIM23 translocase complex subunit Tim14|Schiz...    38   0.002
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    30   0.28 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   2.0  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    26   6.0  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    26   6.0  

>SPBC713.10 |tim16||TIM23 translocase complex subunit
           Tim16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 128

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
 Frame = +1

Query: 64  NMAKYIAQIIVLGAQVVGRAFARALKQEIAASQEXXXXXXXXXXXXXXXXXXXSTGLTLE 243
           ++ + + + I++G+QV+ +AF +A KQ IA + +                      +T++
Sbjct: 2   SLPRAVGRFIIVGSQVMSKAFVQAYKQMIANAAQQSTGQAAASKSSTAVRRGE---MTIQ 58

Query: 244 EAMQILNI--EKVDPEKISKNYEHLFAVNDKSKGGSFYLQSKIVRAKERLDAELKQTSPN 417
           EA  ILNI  E ++  ++ K ++ +F +ND  KGGSFYLQSK+ RA E+L +EL Q    
Sbjct: 59  EAGSILNIKPESLEEGELEKRFQKMFEINDPKKGGSFYLQSKVFRAHEKLKSELDQKI-- 116

Query: 418 SEQGPSKDTS 447
            EQ P+K TS
Sbjct: 117 QEQSPAKPTS 126


>SPAC824.06 |tim14||TIM23 translocase complex subunit
           Tim14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +1

Query: 244 EAMQILNIEK--VDPEKISKNYEHLFAVNDKSKGGSFYLQSKIVRAKERLDAE 396
           EA+QIL++    +  +KI + +  L   N   +GGS Y+ SK+  AK  LDA+
Sbjct: 51  EAIQILSLNNRTLTRQKIKEAHRRLMLANHPDRGGSPYVASKVNEAKSLLDAD 103


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 394 PHLISPSLLRFSIANKTNLLSICRLRRKGVHN 299
           P++ SPSLL  S+AN +   S  RLR   +HN
Sbjct: 495 PYMPSPSLLSGSLANSSEHSSSPRLRGSPIHN 526


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
 Frame = -3

Query: 339  SFRFVVYG-EKVFIIFTNFLGVYFFYI*YLH 250
            SF  ++YG EK ++I  N +G+YFF++ +L+
Sbjct: 1081 SFYSLIYGAEKPYLIH-NVVGLYFFWLLFLY 1110


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 296 LLIFSGSTFSIFNICIASSKVNP 228
           L +F+ +  +I +ICI+S+ VNP
Sbjct: 515 LFLFTNAFGAILSICISSTAVNP 537


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 150 YFLFQGACECSTYNLSAQNYYLSYVFSHVSLSTVLYKFLSLRN 22
           +FLF G  EC +Y    ++Y+  + +  +  + +L+  + L N
Sbjct: 145 FFLFMGITECKSYE-RLKSYFRKHYWPTLKANYILWPAVQLFN 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,095
Number of Sequences: 5004
Number of extensions: 49878
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)