Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29f07
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0259 - 42353992-42354111,42354255-42354385,42355484-423555... 59 3e-09
10_08_0391 + 17486109-17486210,17487032-17487129,17487331-174873... 57 1e-08
07_01_0668 - 5009631-5009643,5010048-5010092,5010413-5010556,501... 39 0.004
03_06_0151 + 31996822-31996958,31997114-31997267 35 0.054
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 30 1.5
12_02_0346 - 17776871-17781445 29 4.7
08_02_0075 - 11953723-11956203,11958213-11958512 29 4.7
06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659... 29 4.7
12_02_0343 - 17748882-17753396 28 6.2
08_02_1039 - 23866743-23866862,23866985-23867266,23867868-238679... 28 8.2
05_04_0214 - 19111493-19112413,19112674-19112750,19113843-191144... 28 8.2
02_03_0275 + 17185335-17185895,17186460-17186516,17187360-171884... 28 8.2
>01_07_0259 -
42353992-42354111,42354255-42354385,42355484-42355571,
42356439-42357282,42357354-42357934,42358962-42359159
Length = 653
Score = 59.3 bits (137), Expect = 3e-09
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 70 AKYIAQIIVLGAQVVGRAFARALKQEIAASQEXXXXXXXXXXXXXXXXXXXSTGLTLEEA 249
A+ +A ++V+G V+GRA +A +Q I + + S +T +EA
Sbjct: 543 ARLLANLLVIGGTVLGRAAVQAYRQAIVNANKTGAAQEAINGIRRA-----SKAMTEQEA 597
Query: 250 MQILNI-EKVDPEKISKNYEHLFAVNDKSKGGSFYLQSKIVRAKERLDA 393
QIL I EK E+I + Y+ +F N +K GSFYLQSK+ RAKE L+A
Sbjct: 598 RQILGISEKSTWEEIVQKYDTMFERN--AKNGSFYLQSKVHRAKECLEA 644
>10_08_0391 +
17486109-17486210,17487032-17487129,17487331-17487361,
17487655-17487707,17489254-17489402,17489828-17489898,
17489988-17490131,17490249-17490309,17492180-17492265,
17492839-17492926,17494012-17494142,17494266-17494394
Length = 380
Score = 57.2 bits (132), Expect = 1e-08
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Frame = +1
Query: 73 KYIAQIIVLGAQVVGRAFARALKQEIAASQEXXXXXXXXXXXXXXXXXXXSTGLTLEEAM 252
K IA +IV+G+ ++GRA +A ++ + + + S +T +EA
Sbjct: 268 KLIANLIVMGSGIIGRAMLQAYRKALDNANKTGVAHETINNIRRA-----SKTMTEQEAR 322
Query: 253 QILNI-EKVDPEKISKNYEHLFAVNDKSKGGSFYLQSKIVRAKERLD 390
QIL + E+ E+I++ Y++LF N KS GSFYLQSK+ RAKE L+
Sbjct: 323 QILGVSEQSTWEEIAQRYDNLFERNAKS--GSFYLQSKVHRAKECLE 367
>07_01_0668 -
5009631-5009643,5010048-5010092,5010413-5010556,
5012583-5012761,5014711-5014773
Length = 147
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 232 LTLEEAMQILNI-EKVDPEKISKNYEHLFAVNDKSKGGSFYLQSKIVRAKERLDAELK 402
+T EA IL + E PEK+ + ++ + N GGS YL SKI AK+ L + K
Sbjct: 69 MTRREAGLILGVRENAHPEKVKEAHKKVMVANHPDAGGSHYLASKINEAKDILLGKTK 126
>03_06_0151 + 31996822-31996958,31997114-31997267
Length = 96
Score = 35.1 bits (77), Expect = 0.054
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 232 LTLEEAMQILNI-EKVDPEKISKNYEHLFAVNDKSKGGSFYLQSKIVRAKERLDAELKQT 408
+T EA IL + E+ +KI + ++ + N GGS Y+ SKI AK+ L + K
Sbjct: 34 MTRREAALILGVRERAAFDKIKEAHKRVMVANHPDAGGSHYIASKINEAKDMLMGKGKSG 93
Query: 409 S 411
S
Sbjct: 94 S 94
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 551 TSVFINIDYALIQNFIDIILL*KV*YNQLHYLLKHCYFYC 670
T V ++ +Q+ +DI+ K+ Y+ L Y LK C+ YC
Sbjct: 449 TEVLEMDEWKNLQSNVDIMPALKISYDYLPYYLKKCFSYC 488
>12_02_0346 - 17776871-17781445
Length = 1524
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 551 TSVFINIDYALIQNFIDIILL*KV*YNQLHYLLKHCYFYC 670
T V+ + ++ L N DI+ + K+ YN L + L+ C+ YC
Sbjct: 470 TRVYESKEWELQPNDDDIMPVLKLSYNYLPFHLQQCFSYC 509
>08_02_0075 - 11953723-11956203,11958213-11958512
Length = 926
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 536 NSD*NTSVFINIDYALIQNFIDIILL*KV*YNQLHYLLKHCYFYC 670
N D T + + ++ L ++ DII K+ YNQL Y L+ + YC
Sbjct: 404 NEDYWTRILDSNEWKLQESIDDIIPALKLSYNQLPYRLQLLFSYC 448
>06_02_0038 + 10865068-10865150,10865249-10865335,10865835-10865936,
10867000-10870078
Length = 1116
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 612 CRKFNTISYITC*SIVTFIVLIINKLL 692
CRKF T +YI I FI ++I+ LL
Sbjct: 1046 CRKFKTSAYIFALVIAVFIYIVIHVLL 1072
>12_02_0343 - 17748882-17753396
Length = 1504
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 551 TSVFINIDYALIQNFIDIILL*KV*YNQLHYLLKHCYFYC 670
T V+ + ++ L N DI+ K+ YN L + L+ C+ YC
Sbjct: 471 TRVYESKEWELQSNDDDIMPALKLSYNYLPFHLQQCFSYC 510
>08_02_1039 -
23866743-23866862,23866985-23867266,23867868-23867966,
23868595-23868903
Length = 269
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 284 SGSTFSIFNICIASSKVNPVEALAAALRAPSGPPPALFAAS--WD 156
SGS + F C AS+ V P A + P GP L A + WD
Sbjct: 40 SGSR-AAFAACCASASVAPAAEAEAVVEEPEGPRTRLIAQNIPWD 83
>05_04_0214 -
19111493-19112413,19112674-19112750,19113843-19114412,
19114605-19114754,19115499-19115643
Length = 620
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 248 ASSKVNPVEALAAALRAPSGPPP 180
ASS + P + LAAAL A + PPP
Sbjct: 149 ASSSLQPSDHLAAALAAVAPPPP 171
>02_03_0275 +
17185335-17185895,17186460-17186516,17187360-17188454,
17188527-17188607
Length = 597
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 221 ALAAALRAPSGPPPALFAASWDAAIS 144
A + LR PS PPP F +W A ++
Sbjct: 52 APTSPLRTPSSPPPLQFPPAWAADVA 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,936,704
Number of Sequences: 37544
Number of extensions: 294632
Number of successful extensions: 963
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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