Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f07
         (698 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071034-1|AAL48656.1|  141|Drosophila melanogaster RE11908p pro...   134   8e-32
AE014297-2114|AAF55254.1|  141|Drosophila melanogaster CG5268-PA...   134   8e-32
AJ278732-1|CAC20095.1|  141|Drosophila melanogaster hypothetical...   130   1e-30
AY113329-1|AAM29334.1|  169|Drosophila melanogaster AT29287p pro...   102   4e-22
AE014298-1063|AAF46276.2|  169|Drosophila melanogaster CG1409-PA...   101   7e-22
AY089686-1|AAL90424.1|   95|Drosophila melanogaster RH62702p pro...    29   6.1  

>AY071034-1|AAL48656.1|  141|Drosophila melanogaster RE11908p
           protein.
          Length = 141

 Score =  134 bits (325), Expect = 8e-32
 Identities = 74/133 (55%), Positives = 92/133 (69%), Gaps = 3/133 (2%)
 Frame = +1

Query: 67  MAKYIAQIIVLGAQVVGRAFARALKQEIAASQEXXXXXXXXXXXXXXXXXXXSTGLTLEE 246
           MAKYIAQIIVLGAQ VGRAF +AL+QEIAASQE                    TG+TLEE
Sbjct: 1   MAKYIAQIIVLGAQAVGRAFTKALRQEIAASQEAARRAGGGKQGDKSAESNLRTGMTLEE 60

Query: 247 AMQILNIEKV-DPEKISKNYEHLFAVNDKSKGGSFYLQSKIVRAKERLDAELK--QTSPN 417
           A QILNI+   + + I+KNYEHLF VN++SKGGSFY+QSK+ RAKERLD E+K  +   +
Sbjct: 61  AKQILNIDDPKNVDAITKNYEHLFQVNERSKGGSFYIQSKVFRAKERLDHEIKAHEQPRS 120

Query: 418 SEQGPSKDTS*DS 456
           S    ++DT+ +S
Sbjct: 121 SNTEAAQDTAEES 133


>AE014297-2114|AAF55254.1|  141|Drosophila melanogaster CG5268-PA
           protein.
          Length = 141

 Score =  134 bits (325), Expect = 8e-32
 Identities = 74/133 (55%), Positives = 92/133 (69%), Gaps = 3/133 (2%)
 Frame = +1

Query: 67  MAKYIAQIIVLGAQVVGRAFARALKQEIAASQEXXXXXXXXXXXXXXXXXXXSTGLTLEE 246
           MAKYIAQIIVLGAQ VGRAF +AL+QEIAASQE                    TG+TLEE
Sbjct: 1   MAKYIAQIIVLGAQAVGRAFTKALRQEIAASQEAARRAGGGKQGDKSAESNLRTGMTLEE 60

Query: 247 AMQILNIEKV-DPEKISKNYEHLFAVNDKSKGGSFYLQSKIVRAKERLDAELK--QTSPN 417
           A QILNI+   + + I+KNYEHLF VN++SKGGSFY+QSK+ RAKERLD E+K  +   +
Sbjct: 61  AKQILNIDDPKNVDAITKNYEHLFQVNERSKGGSFYIQSKVFRAKERLDHEIKAHEQPRS 120

Query: 418 SEQGPSKDTS*DS 456
           S    ++DT+ +S
Sbjct: 121 SNTEAAQDTAEES 133


>AJ278732-1|CAC20095.1|  141|Drosophila melanogaster hypothetical
           protein protein.
          Length = 141

 Score =  130 bits (315), Expect = 1e-30
 Identities = 73/133 (54%), Positives = 91/133 (68%), Gaps = 3/133 (2%)
 Frame = +1

Query: 67  MAKYIAQIIVLGAQVVGRAFARALKQEIAASQEXXXXXXXXXXXXXXXXXXXSTGLTLEE 246
           MAKYIAQIIVLGAQ VGRAF +AL+QEIAASQE                    TG+TLEE
Sbjct: 1   MAKYIAQIIVLGAQAVGRAFTKALRQEIAASQEAVRRAGGGKQGDKSAESNLRTGMTLEE 60

Query: 247 AMQILNIEKV-DPEKISKNYEHLFAVNDKSKGGSFYLQSKIVRAKERLDAELK--QTSPN 417
           A QILNI+   + + I+KNYEHLF V ++SKGGSFY+QSK+ RAKERLD E+K  +   +
Sbjct: 61  AKQILNIDDPKNVDAITKNYEHLFHVIERSKGGSFYIQSKVFRAKERLDHEIKAHEQPRS 120

Query: 418 SEQGPSKDTS*DS 456
           S    ++DT+ +S
Sbjct: 121 SNTEAAQDTAEES 133


>AY113329-1|AAM29334.1|  169|Drosophila melanogaster AT29287p
           protein.
          Length = 169

 Score =  102 bits (245), Expect = 4e-22
 Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
 Frame = +1

Query: 67  MAKYIAQIIVLGAQVVGRAFARALKQEIAASQEXXXXXXXXXXXXXXXXXXX-STGLTLE 243
           MA+Y+AQII+LGAQ+VGRA  + ++QE+ A ++                    +  +TL 
Sbjct: 20  MARYLAQIIILGAQLVGRALVKTMRQELQAFEDAARLQETLKANDPNSGRSAVAKAMTLA 79

Query: 244 EAMQILNIEKV-DPEKISKNYEHLFAVNDKSKGGSFYLQSKIVRAKERLDAELKQT 408
           EA QIL++  + + + I  +Y+HLF VNDKS GGSFY+QSK+ RAKER+D EL++T
Sbjct: 80  EAQQILDVSDLTNRQAIDTHYQHLFRVNDKSTGGSFYIQSKVFRAKERIDQELERT 135


>AE014298-1063|AAF46276.2|  169|Drosophila melanogaster CG1409-PA
           protein.
          Length = 169

 Score =  101 bits (243), Expect = 7e-22
 Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
 Frame = +1

Query: 67  MAKYIAQIIVLGAQVVGRAFARALKQEIAASQEXXXXXXXXXXXXXXXXXXX-STGLTLE 243
           MA+Y+AQII+LGAQ+VGRA  + ++QE+ A ++                    +  +TL 
Sbjct: 20  MARYLAQIIILGAQLVGRALVKTMRQELQAFEDAARLQETLKANDPNSGRSAVAKTMTLA 79

Query: 244 EAMQILNIEKV-DPEKISKNYEHLFAVNDKSKGGSFYLQSKIVRAKERLDAELKQT 408
           EA QIL++  + + + I  +Y+HLF VNDKS GGSFY+QSK+ RAKER+D EL++T
Sbjct: 80  EAQQILDVSDLTNRQAIDTHYQHLFRVNDKSTGGSFYIQSKVFRAKERIDQELERT 135


>AY089686-1|AAL90424.1|   95|Drosophila melanogaster RH62702p
           protein.
          Length = 95

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 99  GRSGCRSSIRTRLETRNSCIPRGSEEGWRWTR 194
           G + CR   + R++    C+P+G + GW W R
Sbjct: 18  GVARCRGCKQKRIKNLTLCVPKGVDAGW-WGR 48


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,430,385
Number of Sequences: 53049
Number of extensions: 512159
Number of successful extensions: 1702
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1694
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)