Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f07
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93382-6|CAB07617.1|  136|Caenorhabditis elegans Hypothetical pr...    82   4e-16
U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms prot...    32   0.34 
AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.      32   0.34 
Z92829-5|CAB07345.1|  324|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF016449-7|AAG24000.2|  350|Caenorhabditis elegans Hypothetical ...    28   5.6  
U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin pr...    28   7.4  
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.        28   7.4  
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo...    28   7.4  
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo...    28   7.4  
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo...    28   7.4  
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z93382-6|CAB07617.1|  136|Caenorhabditis elegans Hypothetical
           protein F45G2.8 protein.
          Length = 136

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
 Frame = +1

Query: 85  QIIVLGAQVVGRAFARALKQEI-----AASQEXXXXXXXXXXXXXXXXXXXSTGLTLEEA 249
           ++ +   + V +A  RA++ EI     AA++                      G++LEE+
Sbjct: 8   KVALAAGEAVAKALTRAVRDEIKQTQQAAARHAASTGQSASETRENANSNAKLGISLEES 67

Query: 250 MQILNIEK-VDPEKISKNYEHLFAVNDKSKGGSFYLQSKIVRAKERLDAELKQTSPNSEQ 426
           +QILN++  ++ E++ K+YEHLF +NDKSKGG+ YLQSK+ RAKER+D E  +     E+
Sbjct: 68  LQILNVKTPLNREEVEKHYEHLFNINDKSKGGTLYLQSKVFRAKERIDEEFGRIELKEEK 127


>U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms protein
           1 protein.
          Length = 442

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 462 HSRVS*SVFRRALLGVG*C--LF*FRI*SLLRSYDFRLQIKRTSFRFVVYGEKVF 304
           H+ +  ++F+R L     C   F F + SLL   DF++ I   +  F+ Y E VF
Sbjct: 290 HTFLHENIFKRRLFNSTACNVFFTFAVSSLLHGLDFQMTITLLALGFIAYSETVF 344


>AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.
          Length = 442

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 462 HSRVS*SVFRRALLGVG*C--LF*FRI*SLLRSYDFRLQIKRTSFRFVVYGEKVF 304
           H+ +  ++F+R L     C   F F + SLL   DF++ I   +  F+ Y E VF
Sbjct: 290 HTFLHENIFKRRLFNSTACNVFFTFAVSSLLHGLDFQMTITLLALGFIAYSETVF 344


>Z92829-5|CAB07345.1|  324|Caenorhabditis elegans Hypothetical
           protein F10A3.5 protein.
          Length = 324

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 165 LLGCSYFLFQGACE--CSTYNLSAQNYYLSYVFSHVSLSTVLYKF 37
           LLG SYF  Q A    CSTY +      + + + ++S+++ LY+F
Sbjct: 83  LLGYSYFTGQLALATLCSTYGMMITMLAMHFYYRYLSVTSSLYRF 127


>AF016449-7|AAG24000.2|  350|Caenorhabditis elegans Hypothetical
           protein C50H11.13 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 180 WRWTRRSAESCCQCFHRVDFRRSNA 254
           W W    AE CC  F  + FR S++
Sbjct: 121 WTWVAMFAERCCNIFFPLRFRTSSS 145


>U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin
           protein 2, isoform b protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +1

Query: 253 QILNIEKVDPEKISKNYEHLFA---VNDKSKGGSFYLQSKIVRAKERLDAELKQTSPNSE 423
           Q+L  EK +P+K++  +  LF    V  K      ++Q  I +    +   L QT P   
Sbjct: 510 QLLKKEK-EPKKLNNEHRKLFENGNVAQKKPEPRRHVQKLIAKKPNSI---LNQTEPTKI 565

Query: 424 QGPSKDTS*DSAVI*CVVIK 483
           +GP K  +  + VI   VI+
Sbjct: 566 EGPDKQETRPTTVIRRTVIR 585


>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 256 ILNIEKVDPEKISKNYEHLFAVNDKSKGGS 345
           IL+++ V  E    NY+ + A+ D++ GGS
Sbjct: 126 ILDMDDVLEEVFDLNYDQILAITDEANGGS 155


>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform c protein.
          Length = 1340

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 256 ILNIEKVDPEKISKNYEHLFAVNDKSKGGS 345
           IL+++ V  E    NY+ + A+ D++ GGS
Sbjct: 90  ILDMDDVLEEVFDLNYDQILAITDEANGGS 119


>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform a protein.
          Length = 1376

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 256 ILNIEKVDPEKISKNYEHLFAVNDKSKGGS 345
           IL+++ V  E    NY+ + A+ D++ GGS
Sbjct: 126 ILDMDDVLEEVFDLNYDQILAITDEANGGS 155


>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform b protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 256 ILNIEKVDPEKISKNYEHLFAVNDKSKGGS 345
           IL+++ V  E    NY+ + A+ D++ GGS
Sbjct: 126 ILDMDDVLEEVFDLNYDQILAITDEANGGS 155


>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
            protein Y39B6A.18 protein.
          Length = 1352

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +1

Query: 271  KVDPEKISKNYEHLFAVNDKSKGGSFYLQSKIVRAKERLDAELKQTSPNSEQGPSKDTS* 450
            K + EK+ K  E L A  +K K      + K+   +ERL AE ++     E+  +++   
Sbjct: 892  KAEREKVKKEEERLKAEEEKVKVEKERNKEKVKAEEERLKAEEEKVKIEKEKVKAEEQKI 951

Query: 451  DSA 459
             SA
Sbjct: 952  KSA 954


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,497,276
Number of Sequences: 27780
Number of extensions: 279150
Number of successful extensions: 795
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)