Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f07
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   6.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.5  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 298 NYEHLFAVNDKSKGGSFYLQSKIVRAKER 384
           ++EH   V D   G   YL+S++ +AKER
Sbjct: 338 DFEHP-CVMDCKVGVRTYLESELAKAKER 365


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 298 NYEHLFAVNDKSKGGSFYLQSKIVRAKER 384
           ++EH   V D   G   YL+S++ +AKER
Sbjct: 253 DFEHP-CVMDCKVGVRTYLESELAKAKER 280


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 298 NYEHLFAVNDKSKGGSFYLQSKIVRAKER 384
           ++EH   V D   G   YL+S++ +AKER
Sbjct: 572 DFEHP-CVMDCKVGVRTYLESELAKAKER 599



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 189 TRRSAESCCQCFHRVDFRRSNAN 257
           +RR ++SCC C   ++    N N
Sbjct: 348 SRRHSDSCCLCLDSMNAVIRNFN 370


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 290  IFSGSTFSIFNIC---IASSKVNPVEALAAALRAPSGPPPALF 171
            +  G+T+ ++      I SS  +PV ++    +AP  PP A F
Sbjct: 1465 LLCGNTYQLYLTSHNKIGSSPSSPVLSVRTQGQAPGIPPAATF 1507


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 290  IFSGSTFSIFNIC---IASSKVNPVEALAAALRAPSGPPPALF 171
            +  G+T+ ++      I SS  +PV ++    +AP  PP A F
Sbjct: 1461 LLCGNTYQLYLTSHNKIGSSPSSPVLSVRTQGQAPGIPPAATF 1503


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 239  KVNPVEALAAALRAPSGPPPALFAASWDAAISCF 138
            +  P ++  AA  A + P PA F +  +    C+
Sbjct: 1036 RAKPGKSSGAAAMASAAPMPACFDSDRERLYDCY 1069


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 430 GPARSWVMFVLVPHLISPSLLR 365
           G A++W  F   P  +SP +L+
Sbjct: 64  GEAQAWFGFAGTPGYLSPEVLK 85


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 251  IASSKVNPVEALAAALRAPSGPPPAL 174
            I +S  +    +  A  APSGPP ++
Sbjct: 958  IGASDPSDTVTIITAEEAPSGPPTSI 983


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,601
Number of Sequences: 438
Number of extensions: 3242
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)