Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29f04
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 31 0.98
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 31 0.98
08_02_0885 + 22268287-22268988 31 1.3
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 31 1.3
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417... 30 1.7
03_05_0573 - 25737373-25737774 30 2.3
03_05_0209 + 22014556-22015308 30 2.3
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605... 30 2.3
08_01_0651 + 5622786-5624165,5624720-5624881,5624984-5625173,562... 29 3.0
11_06_0610 - 25449085-25453284 29 3.9
11_02_0037 - 7613632-7613727,7614452-7615507 29 3.9
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 29 3.9
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733 29 3.9
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 29 5.2
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 29 5.2
01_06_1431 + 37317248-37317907 29 5.2
05_03_0458 + 14280953-14281866,14281964-14282912 28 6.9
05_02_0078 - 6386278-6386291,6386462-6386594,6386721-6388613,639... 28 6.9
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607... 28 6.9
01_01_0699 + 5405178-5405356,5405478-5405693,5405808-5405919,540... 28 6.9
11_06_0690 + 26303733-26306540 28 9.1
09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238 28 9.1
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 28 9.1
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 505 TGASARTLPSPAARCIPPPRLRTGLRGNI---AAQDPVIVHGHV-AFQTS 642
T A PSP PPP G+ G + A P +V G+V +F TS
Sbjct: 285 TAAGVVAAPSPVTSLAPPPATAVGVSGGVRAPAEPPPAVVMGNVMSFSTS 334
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 31.1 bits (67), Expect = 0.98
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 460 GKRVR*R--VPSGPQLSTGASARTLPSPAARCIPPPRLRTG-LRGNIA 594
G+R R R + PQ + G+ A L + R PPPRLRT L G +A
Sbjct: 156 GRRSRPRRCLAGRPQATAGSPAARLAARRLRTSPPPRLRTSRLAGAVA 203
>08_02_0885 + 22268287-22268988
Length = 233
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 417 LTMTSGYLMERSALRKASSVTR--TVWPAAVHRCKRPNTPITSCTMHPSPPP 566
LTMT +M KA+ + T PA RC+RP+ +C M PP
Sbjct: 31 LTMTHNCVMYLKNKEKAAGSVKGKTAIPATPRRCRRPDGSNPACKMRWERPP 82
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +3
Query: 492 PAAVHRCKRPNTPITSC-TMHPSPPPANRSSGEYR 593
P HRC P+ +C T P+PP SS E R
Sbjct: 328 PRLTHRCSTTTQPLPTCGTPAPAPPAGQPSSAEDR 362
>02_01_0567 -
4168164-4168250,4168672-4168828,4168951-4169090,
4170318-4170456,4170562-4170830,4170914-4171000,
4171259-4171327,4171427-4171455,4171544-4171950,
4172906-4172977,4173150-4173221,4173299-4173370,
4173454-4173519,4173717-4173785,4173866-4173995,
4174846-4174975
Length = 664
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Frame = +3
Query: 378 VNFAVFSETVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHR--------CKRPNTPI 533
VNF + S + SL + G L + L+ + ++ P+A + P++P
Sbjct: 178 VNFDISSNNFSGSLPPSLGSLSSLTTLKDGNPFNTSIAPSASPSSTPTGSTPTQTPSSPS 237
Query: 534 TSCTMHPSPPPANRSSGEYRRSGPCHCSWTCRLSDKRV 647
+S T PS P+N S G R S + S R+
Sbjct: 238 SSGTPSPSSSPSNSSGGSTARDSSSPSSRKHKSSTLRI 275
>03_05_0573 - 25737373-25737774
Length = 133
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 34 HLHVRRSPPHLPRKL----SLRIGARPRR*KLHAANPTSKRKAQGSYFGR*ERSYHR 192
H RR PP LPR + S G RP R + A G+ FG+ +R +HR
Sbjct: 53 HRLQRRDPPLLPRLVRWPPSSSPGVRPGRATVEAVAAEEAVVGSGASFGQAQRRHHR 109
>03_05_0209 + 22014556-22015308
Length = 250
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +3
Query: 348 ATLKLTASTWVNFAVFSETVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNT 527
A + L + + V + VFS T+ L ++M + AL S+ A +RC +
Sbjct: 36 ALISLVSPSSVEYTVFSSTLPAPLRALGSFVMSKKALFVLSNAIFLFLAADYYRCFFSLS 95
Query: 528 PITS 539
P TS
Sbjct: 96 PSTS 99
>02_02_0007 +
6056281-6057024,6057273-6057539,6057622-6057765,
6057844-6058191,6058713-6059102
Length = 630
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 34 HLHVRRSPPHLPRKLSLRIGARPRR*KLHAANPTSKR 144
H H +PPHL R+ + A P R LH PT R
Sbjct: 20 HRHHPAAPPHLLRQRRGSVAATPLRLGLHLPTPTPLR 56
>08_01_0651 +
5622786-5624165,5624720-5624881,5624984-5625173,
5625253-5625284
Length = 587
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Frame = +3
Query: 543 TMHPSPPPANRSSGEYRRSGPCHCS---WT 623
T PPP NR +R S PC C+ WT
Sbjct: 127 TSDRQPPPMNRRMRHHRASAPCPCADVLWT 156
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 484 PSGPQLSTGASARTLPSPAARCIPPPRLR 570
PS P+ S+ + ++LP PA +PPP ++
Sbjct: 1106 PSVPKASSPPTEKSLPPPATVSLPPPTVK 1134
>11_02_0037 - 7613632-7613727,7614452-7615507
Length = 383
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +2
Query: 416 PYDDFRLPNGKICTSESEFGNAYRLARSCPQVQAPE-HSHHQLHDASLP 559
P+ + G + +G AY AR+ P P H HH H +P
Sbjct: 223 PHHHHKNGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQIIMP 271
>09_04_0076 +
14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = -1
Query: 514 LHLWTAAGQTVRVTELAFRSADLSIR*PEVIVRLVVTVSEKTAKFTQVEAVSFNVAHLKF 335
L+ T+ ++RVT RS D+ + P V L V++S+ +FTQ+ ++ + L+F
Sbjct: 749 LYQITSRFDSLRVTP---RSLDILAKGPPVCGDLAVSLSQAGPQFTQIMRCNYAIKALRF 805
Query: 334 RCA 326
A
Sbjct: 806 STA 808
>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
Length = 181
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 510 CKRPNTPITSCTMHPSPPPA 569
CK PI+ CT P+PPPA
Sbjct: 104 CKVQAPPISQCTAVPTPPPA 123
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Frame = +2
Query: 101 HVDRNFTLLIQLQNGKPKALILEDKSGAIIELKENGQAILNGASKGFPIIEKDVFAFRQP 280
HV R + + IL+D ++ L E ++NG+S+G P++ P
Sbjct: 44 HVSRELRMTAEGSKYADGEAILKDAFQRMVTLIELDH-VINGSSQGLPLLAGVNVVVHLP 102
Query: 281 SNRI--GVGSLYGLMVFCTSKLEVCYIEANGFYLGKLRGL 394
+ + GV Y L V T IEA + G L L
Sbjct: 103 GDELNFGVDESYNLSVPATGSPIYAQIEAQTVF-GALHAL 141
>01_06_1713 - 39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 572 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLGRGMAA 721
++ GG L LSL + + F+ A ++ + DAA DL ++GR + A
Sbjct: 1078 ELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKA 1127
>01_06_1431 + 37317248-37317907
Length = 219
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 478 RVPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPVI 612
R P P S+ +++ T SPAA PPRL + AA P I
Sbjct: 90 RSPFSPPPSSSSNSSTTASPAAAAAAPPRLIPTIPRPAAALAPHI 134
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +3
Query: 519 PNTPIT-SCTMHPSPPPANRSSGEYRRSGPCHCSWTCRLSDKRVFTPSPAQTPLK 680
P P T SC+ HP+PPP + S S + P+ AQTP +
Sbjct: 77 PLPPTTLSCSSHPTPPPPPSPTTSPSASSLPPVPTPRSASSSKCSAPTSAQTPTR 131
>05_02_0078 -
6386278-6386291,6386462-6386594,6386721-6388613,
6391153-6391239,6391691-6391765,6393982-6394327,
6394428-6394450
Length = 856
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 645 HACLKGDMSMNNDRVLSGDIPPKTCSQAGGRDASCSW*WECSGA 514
H + D S DR++S I +A GRD W E SGA
Sbjct: 288 HCNVYSDKSNEADRLVSAKISSHENKEASGRDIYDRWTSESSGA 331
>02_04_0224 -
21059328-21059888,21060388-21060462,21060715-21060798,
21060866-21061183,21061511-21061722,21061766-21062030
Length = 504
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 703 QITSFVQIFSGVCAGDGVNTRLSERRHV 620
++ S ++F G AGD V R+ E HV
Sbjct: 18 EVQSLAELFGGPGAGDAVEWRMPENHHV 45
>01_01_0699 +
5405178-5405356,5405478-5405693,5405808-5405919,
5406335-5406397,5406468-5406606,5406822-5406877,
5408088-5408161,5408270-5408417,5408505-5408678,
5408809-5408896,5408996-5409109,5409728-5409825,
5409927-5410017,5410440-5410534,5410672-5410825,
5410864-5410876,5411276-5411384
Length = 640
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 13/56 (23%)
Frame = +3
Query: 450 SALRKASSVTRTVWP-AAVHRCK-----RPNTPI-------TSCTMHPSPPPANRS 578
SA AS+ + + P AA H C+ RP +P+ + +MHPSPPP S
Sbjct: 7 SAPSHASAASSSPLPFAAAHPCRASWTPRPTSPLPPLSLLRATASMHPSPPPEGHS 62
>11_06_0690 + 26303733-26306540
Length = 935
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 493 PQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPVIVH 618
P L T + + S A PPP LR L G + P+IV+
Sbjct: 707 PNLCTLDPEKEVESEAGIFEPPPALRAQLSGPVQCGSPLIVY 748
>09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238
Length = 472
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 515 APEHSHHQLHDAS-LPPACEQVFGGISP 595
A H HHQ+ A L P +Q FGG SP
Sbjct: 375 AEHHHHHQIPMAQPLVPNLQQQFGGSSP 402
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 23 NGQHIFTFDGRHLTFPGNCRYVLAHDHVDR 112
NGQH+ +D R F G RY H H+ R
Sbjct: 302 NGQHV-DYDQRPDIFRGTIRYASVHAHLGR 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,552,019
Number of Sequences: 37544
Number of extensions: 542036
Number of successful extensions: 2276
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2262
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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