Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f04
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical p...    30   2.0  
Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p...    29   3.5  
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos...    29   3.5  
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    29   4.7  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    29   4.7  
Z99273-4|CAB16479.1|  124|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z81052-5|CAB02876.1|  512|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical
           protein K08A2.1 protein.
          Length = 411

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 481 VPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPVI 612
           VP+ P +++ + A   PSP A   PPPRL           +PV+
Sbjct: 262 VPTAPDVTSESPATPQPSPPAVTPPPPRLLPAATTESHQTEPVL 305


>Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical
           protein T19B10.3 protein.
          Length = 653

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/88 (22%), Positives = 38/88 (43%)
 Frame = +2

Query: 14  VVVNGQHIFTFDGRHLTFPGNCRYVLAHDHVDRNFTLLIQLQNGKPKALILEDKSGAIIE 193
           V +NG++I T   R+     N   +      + N   ++    G+     + D+ G + +
Sbjct: 458 VYLNGKYIDTLTRRYYNLTRNSVIIEGCLENEENRLFMLVENQGRKTFETINDRKGILSD 517

Query: 194 LKENGQAILNGASKGFPIIEKDVFAFRQ 277
           +  NGQAI      G  +  ++ F FR+
Sbjct: 518 VFMNGQAIQFWTQCGIKLPLQEDFYFRK 545


>Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical
           protein D2085.3 protein.
          Length = 666

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/91 (21%), Positives = 36/91 (39%)
 Frame = +2

Query: 422 DDFRLPNGKICTSESEFGNAYRLARSCPQVQAPEHSHHQLHDASLPPACEQVFGGISPLR 601
           DD  +PNG     ES  GN     +  P +Q      + +++ +      Q  G +    
Sbjct: 384 DDVVIPNGAHIPKESIIGNGVMYPKELPNIQNTAIFKNAINEETFEKLSSQPIGNVH--- 440

Query: 602 TLSLFMDMSPFRQACIHAVTGTDAAKDLHEA 694
            +S F +  PF +  ++  T     +D  E+
Sbjct: 441 -VSKFRNGGPFWRRSVNGKTNFALEEDDSES 470


>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
            protein M106.1 protein.
          Length = 1244

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 572  QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 706
            ++ GG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
            protein M106.1 protein.
          Length = 1244

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 572  QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 706
            ++ GG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
            and X-chromosomeassociated MIX-1 protein protein.
          Length = 1244

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 572  QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 706
            ++ GG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
            protein M106.1 protein.
          Length = 1244

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 572  QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 706
            ++ GG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 389  GLLGDGNNEPYDDFRLPNGKI 451
            GLLG  NN+P DD   P+G +
Sbjct: 1036 GLLGTYNNDPADDLTTPSGTV 1056


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -1

Query: 721 SCHSSSQITSFVQIFSGVCAGDGVNTRLSERRHVHEQ*QGPERRYSP-EDLFAGGGEGCI 545
           S H S      + + S V A +GV  R++ +        GP ++ +P EDL  G GE C+
Sbjct: 179 SDHVSYSSFCHLSVRSCVLAKNGVRLRVATK--------GPCKKRNPCEDLRCGPGEDCV 230

Query: 544 VQLVMGV 524
           V  + G+
Sbjct: 231 VNQINGI 237


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -1

Query: 721 SCHSSSQITSFVQIFSGVCAGDGVNTRLSERRHVHEQ*QGPERRYSP-EDLFAGGGEGCI 545
           S H S      + + S V A +GV  R++ +        GP ++ +P EDL  G GE C+
Sbjct: 187 SDHVSYSSFCHLSVRSCVLAKNGVRLRVATK--------GPCKKRNPCEDLRCGPGEDCV 238

Query: 544 VQLVMGV 524
           V  + G+
Sbjct: 239 VNQINGI 245


>Z99273-4|CAB16479.1|  124|Caenorhabditis elegans Hypothetical
           protein Y45F10C.4 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +3

Query: 60  SPSQETVATYWRTTTSIETSRC*SNFKTESPRLL-FWKIRAELSSN*KKMDRLF*TELPK 236
           S S  +++  W+       S+  ++ KT + +    WK+ ++ +    +  ++       
Sbjct: 19  SGSFSSISEEWKAVCECNLSKLNNHAKTGNCKTTALWKVTSDTNCTASEYLKITVFPAND 78

Query: 237 DSRSSKRMCSLSVNQATESVLAHCTVSWSSAHL 335
           D  +    C+++    TE   A C V++S+A L
Sbjct: 79  DPLNRVEQCTMTPCDQTEKTPADCNVAFSAAKL 111


>Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical
           protein F49A5.7 protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 402 TVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPSPPPAN 572
           T +T+   +S  L+  S+  + SS TRTV  +        +T I   T   +P P+N
Sbjct: 88  TFSTNEASSSTKLLSTSSTAEISSTTRTVSRSIKPETSTASTTIRPLTTTTTPAPSN 144


>Z81052-5|CAB02876.1|  512|Caenorhabditis elegans Hypothetical
           protein D2023.6 protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/65 (26%), Positives = 37/65 (56%)
 Frame = +2

Query: 122 LLIQLQNGKPKALILEDKSGAIIELKENGQAILNGASKGFPIIEKDVFAFRQPSNRIGVG 301
           L+  L NGK + ++L+   G  + + ++ + + +       I++ D+   R+ ++++GVG
Sbjct: 322 LINSLGNGKYEIVLLDH--GLYLNISDHIRKLYSDL--WLAILKPDLQEIRKVASQMGVG 377

Query: 302 SLYGL 316
            LYGL
Sbjct: 378 ELYGL 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,226,836
Number of Sequences: 27780
Number of extensions: 422282
Number of successful extensions: 1587
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1577
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)