Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f01
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   7.1  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   7.1  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   7.1  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   7.1  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   7.1  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 596 WNGTFPYICKFRRRLFKIEQNMVTSSGAKINR 691
           WN   PY  + +  + + ++ M+  +  KINR
Sbjct: 341 WNSLLPYSPENQAVVARHDEAMIFPADVKINR 372


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 499 FCTISSTHETCGI 537
           +C I +TH  CGI
Sbjct: 361 YCNIVATHLVCGI 373


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 343 RSISHFPENKPSRRNNTIEKTSNWKK 420
           R  S  P+   S  NNTI   +N+KK
Sbjct: 295 RERSREPKIISSLLNNTIHNNNNYKK 320


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 343 RSISHFPENKPSRRNNTIEKTSNWKK 420
           R  S  P+   S  NNTI   +N+KK
Sbjct: 306 RERSREPKIISSLLNNTIHNNNNYKK 331


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 343 RSISHFPENKPSRRNNTIEKTSNWKK 420
           R  S  P+   S  NNTI   +N+KK
Sbjct: 306 RERSREPKIISSLLNNTIHNNNNYKK 331


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 343 RSISHFPENKPSRRNNTIEKTSNWKK 420
           R  S  P+   S  NNTI   +N+KK
Sbjct: 295 RERSREPKIISSLLNNTIHNNNNYKK 320


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,449
Number of Sequences: 438
Number of extensions: 3549
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)