Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29e23
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.9  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               21   7.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = -1

Query: 197 NNALNNLDFSTFFPTFMLNTI 135
           NN+++ ++ + F P + L+T+
Sbjct: 368 NNSIDRIESNAFLPLYNLHTL 388


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 230 NVEINENEPVKFSTSRAASR 289
           N+E +ENE  K++TS  + R
Sbjct: 188 NIEKSENESKKYATSSNSLR 207


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 448 YPIIKCFVEF 419
           Y ++KC+VEF
Sbjct: 112 YQLVKCYVEF 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,737
Number of Sequences: 438
Number of extensions: 3090
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)