Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29e19
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0011 - 99475-99701,99846-99954,100051-100218,100867-101142 42 7e-04
01_01_0596 + 4435643-4436664,4437241-4437766 32 0.44
06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568... 32 0.58
02_03_0065 - 14629676-14629804,14631119-14631247,14631383-146317... 31 1.3
11_02_0068 + 7991816-7992603,7995209-7997177 29 4.1
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 29 4.1
06_01_0724 + 5299278-5299542,5299690-5299950,5300246-5300351,530... 29 4.1
06_01_0296 - 2156895-2157160,2157435-2157527,2157932-2158031,215... 29 4.1
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359... 29 5.4
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342... 29 5.4
02_04_0044 - 19198001-19199236 29 5.4
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 28 9.5
07_03_0312 + 16606724-16606796,16606885-16607015,16607105-166072... 28 9.5
06_01_0308 + 2229025-2229260,2229448-2230145,2230377-2230469,223... 28 9.5
06_01_0169 - 1346281-1349188,1350069-1350184 28 9.5
04_04_0316 - 24338774-24339367 28 9.5
>03_01_0011 - 99475-99701,99846-99954,100051-100218,100867-101142
Length = 259
Score = 41.5 bits (93), Expect = 7e-04
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 377 DTPLTRLGWFQAQLVGEGMRMAGVSIKHVYASPALRCVETAQGFLDGLRADP--SVKIKV 550
D PLT G +A V + G I V SP +RC++TA + L P ++K+ +
Sbjct: 36 DPPLTDAGLLRASTVASRILADGFHIHRVLVSPFIRCLQTAAQAIAALSPLPRINIKVSI 95
Query: 551 EPGLFEFKN 577
E GL E N
Sbjct: 96 EYGLSEMMN 104
>01_01_0596 + 4435643-4436664,4437241-4437766
Length = 515
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -2
Query: 484 SQRRRSVHVLDGDAGHPHPLPHQLRLEPSQSGQRGVFHVPSFTTGSVRQ 338
++ + V L+ H HP PH +R P GQ G F P F S Q
Sbjct: 310 NRTKELVEALEPAHAHGHPEPHAVRRRP--EGQSGAFSPPPFMEPSTAQ 356
>06_03_0272 +
19053455-19053587,19054665-19056627,19056827-19056887,
19056975-19057198,19057573-19057642,19058453-19058515
Length = 837
Score = 31.9 bits (69), Expect = 0.58
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = -2
Query: 604 EVDSLGHVPVLKLEQARLYFDLHGRVRTQAVQESLSSLDASQRRRSVH-VLDGDAGH-PH 431
++D V L+ ++A L + +R Q VQ+S DA R + + D + H H
Sbjct: 193 DLDGPSRVRGLEKDRAEL-LKMLDELRDQ-VQQSCEVTDAPSRSATTNRPADASSSHGAH 250
Query: 430 PLPHQLRLEPSQSGQRGVFHVPSFTTGS 347
P+QLR +PS G H PS S
Sbjct: 251 DQPNQLRHDPSVLHWNGSHHSPSLNVQS 278
>02_03_0065 -
14629676-14629804,14631119-14631247,14631383-14631736,
14631817-14632063,14632155-14632231,14632574-14632648,
14632721-14632822,14632966-14633084,14633538-14633627,
14634866-14635022,14635085-14635098,14635425-14635548,
14635628-14635678,14635793-14635891,14636962-14637072
Length = 625
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 635 LNVDMTYKPYVEMDASAETMDE 700
L VD+TYKP+ E D+ +T DE
Sbjct: 469 LTVDVTYKPFKEGDSDVDTSDE 490
>11_02_0068 + 7991816-7992603,7995209-7997177
Length = 918
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +2
Query: 419 VGEGMRM-AGVSIKHVYASPALRCVETAQG----FLDGLRADPSVKIKVEPGL 562
VG G ++ A I H+ R +E ++ LDGL + PSV++KV+P L
Sbjct: 97 VGFGQKLLASRRIGHMIRELKARVMEESERQRRYMLDGLASGPSVRVKVDPRL 149
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -3
Query: 744 SLTAACIATSPRLKNSSIVSADASISTYGL*VMSTLRPALHSSMGVMKSIPLGMCQFLN 568
++T C ++ P KN I S L ++S A+H + +P MC LN
Sbjct: 73 AVTGLCTSSCPHPKNMVIADLGCSSGPNALTLVSAAVDAIHRYCAQHEQLPPEMCVLLN 131
>06_01_0724 +
5299278-5299542,5299690-5299950,5300246-5300351,
5300633-5300697,5300759-5301233,5302239-5302347,
5302432-5302710,5303025-5303231,5303319-5303468,
5304164-5304277
Length = 676
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 736 GGLHRYFAAFEELVHCLGRCIHLDVRFVSHV-DVEAGLAQFDGRHEVD 596
GGLH F+ V C+G I V HV D + AQ++G+ +D
Sbjct: 58 GGLHDVFSGLAVAVDCVGG-IGAITSLVRHVYDAQIAAAQWNGKELID 104
>06_01_0296 -
2156895-2157160,2157435-2157527,2157932-2158031,
2158634-2158738,2158832-2158972,2159056-2159568
Length = 405
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 523 TQAVQESLSSLDASQRRRSVHVLDGDAGHPHPLPHQLRLEPSQSGQ 386
T AV S ++ DA + DA HPHP PH ++ P + G+
Sbjct: 22 TAAVSPSAAA-DALRSLLDAGAGAADAAHPHPHPHLSKILPFRRGR 66
>06_01_0503 -
3596664-3596837,3597647-3598069,3598362-3598595,
3598720-3598993,3599390-3599523,3599572-3599634,
3599759-3599846,3599919-3599989,3600898-3601010,
3601836-3602004,3602580-3602671,3602819-3603295,
3603736-3604090
Length = 888
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 487 RRDCSGIPGRLACG--PVREDQSRAGLVRV*ELAHAQGNRLHDAHRTVQG 630
RR S +P LA P R Q + L R EL H + R H +HR G
Sbjct: 14 RRRRSPLPAALALAVPPSRSLQVWSNLARRGELTHPRHRRFHRSHRFCSG 63
>03_03_0196 +
15331604-15331646,15332141-15332260,15334106-15334221,
15334661-15334749,15334885-15334927,15335567-15335741,
15335840-15335971,15336046-15336383,15336791-15337129,
15337293-15337975,15338228-15338807,15339356-15339679,
15340149-15340262
Length = 1031
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 514 RLACGPVREDQSRAGLVRV*ELAHAQGNRLHDAHRTVQ 627
R+AC VRE + R + E +H+Q N +++ H ++
Sbjct: 524 RIACSEVREFEYRDSDAQYMETSHSQANGINEMHLQIR 561
>02_04_0044 - 19198001-19199236
Length = 411
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 341 AHRAGGKGGYVKDTPLTRLGW 403
++ AG GG TPL RLGW
Sbjct: 259 SNSAGADGGAASPTPLVRLGW 279
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 596 IDFMTPIELCKAGLNVDMTYKPYVEMDASAETMDEFFKR 712
+ F+ + C V + P+V +++ET+DEFF+R
Sbjct: 183 LHFLASQKRCADQFTVIVRNIPHVSSHSTSETVDEFFRR 221
>07_03_0312 +
16606724-16606796,16606885-16607015,16607105-16607274,
16607365-16607511,16608248-16608299,16608725-16608899,
16609523-16609605,16610528-16610740,16611850-16611981,
16612517-16612652,16613218-16613273,16613868-16613910,
16613990-16614435
Length = 618
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 694 HCLGRC-IHLDVRFVSHVDVEAGLAQFDGRHEVDSLG 587
H L C + LD + H D EA + + GR+ DS+G
Sbjct: 367 HKLLTCKLDLDCKKTLHFDSEASMIRIQGRNSKDSIG 403
>06_01_0308 +
2229025-2229260,2229448-2230145,2230377-2230469,
2230815-2231992
Length = 734
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 636 RPALHSSMGVMKSIPLGMCQFLNSNKPGSTLIFTDGSARKPSRNP 502
RP++ ++K++ + L S++ T +F D S PS NP
Sbjct: 671 RPSMAEVTDMLKAVRIAWRDLLVSSEYNVTEVFVDSSEAPPSGNP 715
>06_01_0169 - 1346281-1349188,1350069-1350184
Length = 1007
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 604 HDAHRTVQGRPQRRHDLQTVRRDG 675
H++ + +G+P R HDL T RDG
Sbjct: 245 HESLKRFEGKPIRAHDLGTHLRDG 268
>04_04_0316 - 24338774-24339367
Length = 197
Score = 27.9 bits (59), Expect = 9.5
Identities = 34/122 (27%), Positives = 47/122 (38%)
Frame = -2
Query: 757 VFFGVVDGGLHRYFAAFEELVHCLGRCIHLDVRFVSHVDVEAGLAQFDGRHEVDSLGHVP 578
V FG+++ GLH Y A LV LG LD G+ D + S GHV
Sbjct: 11 VAFGLINLGLHLYERAPGWLVWMLGGVTTLDRALGDCSMCRYGMVAGDVVRTL-SCGHV- 68
Query: 577 VLKLEQARLYFDLHGRVRTQAVQESLSSLDASQRRRSVHVLDGDAGHPHPLPHQLRLEPS 398
+ D V + LS + ++ RSV VL A PLP + P
Sbjct: 69 --------FHKDCDYSVDKWLREHGLSCPECRKKARSVRVLPWRARPQQPLPEEQNPPPQ 120
Query: 397 QS 392
++
Sbjct: 121 ET 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,621,655
Number of Sequences: 37544
Number of extensions: 473528
Number of successful extensions: 1506
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -