Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29e19
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29154-3|AAA68419.2|  283|Caenorhabditis elegans Hypothetical pr...   119   3e-27
U28929-2|AAN63411.1|  306|Caenorhabditis elegans Hypothetical pr...    95   7e-20
Z81086-7|CAB03118.2|  316|Caenorhabditis elegans Hypothetical pr...    58   7e-09
Z72511-5|CAD89724.1|  314|Caenorhabditis elegans Hypothetical pr...    56   3e-08
AF040659-7|AAK39390.2|  153|Caenorhabditis elegans Hypothetical ...    40   0.002
Z78012-7|CAB01411.1|  284|Caenorhabditis elegans Hypothetical pr...    37   0.014
AC024751-5|AAK21514.2|  220|Caenorhabditis elegans Hypothetical ...    31   1.2  
U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical ...    30   2.1  
AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine re...    29   4.9  
Z70756-10|CAI46587.1|  228|Caenorhabditis elegans Hypothetical p...    28   8.6  

>U29154-3|AAA68419.2|  283|Caenorhabditis elegans Hypothetical
           protein T07F12.1 protein.
          Length = 283

 Score =  119 bits (286), Expect = 3e-27
 Identities = 66/185 (35%), Positives = 101/185 (54%), Gaps = 6/185 (3%)
 Frame = +2

Query: 221 RWVFALRHGERVDLTYGP---WVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPLT 391
           R VF +RHGER D  +G    W+        Y   D+NLP  L  RA G  G+  DTPLT
Sbjct: 4   RRVFIIRHGERCDFAFGKSGLWINSFDSRGRYRPLDINLPRTLPKRADGWQGFAADTPLT 63

Query: 392 RLGWFQAQLVGEGMRMAGVSIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEF 571
            +G+ Q++L G  +R  G+ I HV+ SPALRC++T  G L G+  D  ++  VEPGL+E+
Sbjct: 64  EIGYLQSKLTGRALRDNGIEINHVFCSPALRCIQTTVGLLKGMGLDKRIQFSVEPGLYEW 123

Query: 572 KNWHMPKGIDFMTPIELCKAGLNVDMTYKP-YVEMDASA-ETMDEFFKRGEVAMQAAVND 745
             +       ++ P +L K G  V   Y P + + +    ET+ +F++R   ++   +++
Sbjct: 124 MVFARYARPCWIPPKDLKKLGYPVQENYVPCWTDKELRMNETLADFYQRSFGSINKILSE 183

Query: 746 -TEKN 757
            TE N
Sbjct: 184 CTEGN 188


>U28929-2|AAN63411.1|  306|Caenorhabditis elegans Hypothetical
           protein F09C12.8 protein.
          Length = 306

 Score = 94.7 bits (225), Expect = 7e-20
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 4/179 (2%)
 Frame = +2

Query: 227 VFALRHGERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPLTRLGWF 406
           +  +RH ERVD     W+  C +   Y   DLN+P +L  +   K  Y +DT +TR G  
Sbjct: 48  MMVMRHSERVDDCCPGWIEKCNKEGKYEPFDLNMPTRLPIQRPLKD-YTRDTCITRSGAV 106

Query: 407 QAQLVGEGMRMAGVSIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEFKNWHM 586
            AQ++G G+ M   +   +Y SP+LRC++TA    +   +     ++VEPGLFE  N+H 
Sbjct: 107 LAQMIGRGLLMTDNTPDVIYCSPSLRCIQTATWVRE--MSGSKALLRVEPGLFE--NFHY 162

Query: 587 PKGID-FMTPIELCKAGLNVDMTYKPYVEMD---ASAETMDEFFKRGEVAMQAAVNDTE 751
           P G+  F++  +L +    VD T++P++ ++      ET DE+  R ++ + A  + +E
Sbjct: 163 PHGVPRFIS--QLQRHVFPVDKTFRPFLSLETVVGKQETNDEYNARIQLILNAIADQSE 219


>Z81086-7|CAB03118.2|  316|Caenorhabditis elegans Hypothetical
           protein F53B6.7 protein.
          Length = 316

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 4/149 (2%)
 Frame = +2

Query: 227 VFALRHGERVDLTYGPWVPHCFENDT--YVRKDLNLPLKLAHRAGGKGGYVKDTPLTRLG 400
           + A+ H E + L +  WV  C+      Y   D+N+P KL  R      Y  D PLT  G
Sbjct: 55  IVAMSHAESMGLIFPNWVRVCYRRGPMEYHPYDMNMPPKLVPRPPLH--YKFDPPLTERG 112

Query: 401 WFQAQLVGEGMRMAGVSIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEFKNW 580
              ++  G G+  AG+    V+ SP ++ V+TA   + GL    +  I ++P L  ++  
Sbjct: 113 QIVSETYGRGLLNAGIRPFEVFCSPDMKSVQTAAFLIKGLGLSYTT-INIDPALLSYRQM 171

Query: 581 HMPKGID--FMTPIELCKAGLNVDMTYKP 661
            +P       ++P      G  +++ Y P
Sbjct: 172 -LPTNFQEMLLSPKAFFNMGYPINIQYLP 199


>Z72511-5|CAD89724.1|  314|Caenorhabditis elegans Hypothetical
           protein F55A11.11 protein.
          Length = 314

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
 Frame = +2

Query: 236 LRHGERVDLTYGP-WVPHCFENDTYVRK----DLNLPLKLAHRAGGKGGYVKDTPLTRLG 400
           +R  ERVD  +G  W+    +++ Y+ K    D+N+P            Y  + P+T +G
Sbjct: 44  MRSAERVDRVFGSAWL----KSEKYMTKVNATDINVPKGAVLHPHF---YHFNPPITNIG 96

Query: 401 WFQAQLVGEGMRMAGVSIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEFKNW 580
            + AQL+G  +R  G+    ++ SP LR ++TA      +      +I VEPGL E   W
Sbjct: 97  KYSAQLIGRALRNRGIEPGVIFCSPTLRTLQTAA----AIAKSTGARILVEPGLLEPMEW 152

Query: 581 HMPKGIDFMTP-IELCKAGLNVDMTYKPYVEM 673
           +   G   +    +       VD TYKP   M
Sbjct: 153 YRRAGAKQLPDFFDEALDFPQVDKTYKPIFSM 184


>AF040659-7|AAK39390.2|  153|Caenorhabditis elegans Hypothetical
           protein ZK484.6 protein.
          Length = 153

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 35/99 (35%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
 Frame = +2

Query: 377 DTPLTRLGWFQAQLVGEGMRMAGVSIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEP 556
           D  LT  G  QA  VG+    A ++I+ +  SP  RC+ETA   +     +   KI VEP
Sbjct: 31  DPELTLRGKQQAHEVGK--HFANMNIEAIVVSPFTRCIETAAQIV--AMMENKAKICVEP 86

Query: 557 GLFE-FKNWHMPKGIDFMTPIELCKAGLNVDMTYKPYVE 670
           GL E       P  I  M  I+  +    VD +YKP  E
Sbjct: 87  GLMEPLYLCKNPPTIPSMDKIK--EYSTQVDESYKPVFE 123


>Z78012-7|CAB01411.1|  284|Caenorhabditis elegans Hypothetical
           protein C52E4.7 protein.
          Length = 284

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 1/141 (0%)
 Frame = +2

Query: 227 VFALRHGERVDLTYGPWVPHC-FENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPLTRLGW 403
           +  +R  E ++  +  W      + + Y   D+N P++L  R      Y  D P+   G 
Sbjct: 34  IIVMRCAETINEIFSDWTKRANLDENKYTPFDVNAPIELPRRTDMLKSYNLDPPINETGK 93

Query: 404 FQAQLVGEGMRMAGVSIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEFKNWH 583
             ++++   +         ++ SP    VETA   +     +    I++EP   E    H
Sbjct: 94  IASKMIARELCDRHAIPSVIFCSPDFASVETAH-LIKSYIGEKCGAIRIEP---ELSTLH 149

Query: 584 MPKGIDFMTPIELCKAGLNVD 646
               + F  P      G  +D
Sbjct: 150 KSAHV-FFGPNHFTSLGYGID 169


>AC024751-5|AAK21514.2|  220|Caenorhabditis elegans Hypothetical
           protein Y18H1A.4 protein.
          Length = 220

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 434 RMAGVSIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFE 568
           R     I H +ASP  R +ETA   ++    D  +K+K + GL E
Sbjct: 55  RFENAQISHTFASPFDRTIETASTIIE----DKGMKVKADGGLCE 95


>U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical
           protein ZC317.7 protein.
          Length = 574

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 24/75 (32%), Positives = 31/75 (41%)
 Frame = -3

Query: 585 MCQFLNSNKPGSTLIFTDGSARKPSRNP*AVSTHLSAGEAYTCLMETPAILIPSPTSCAW 406
           +C+F N NKP   ++       K SR    V   LS  EA       P   + S  S   
Sbjct: 36  ICEFYNDNKPACNVV------EKSSRES-DVFVDLSGKEAEIIARPAPIAPVSSDASKPS 88

Query: 405 NHPSLVSGVSFTYPP 361
           N PS+ S +  T PP
Sbjct: 89  NSPSVASRI-LTIPP 102


>AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.8 protein.
          Length = 789

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 215 SRRWVFALRHGERVDLTYGPWVPHCFENDTYVRKD 319
           S  W+ A +   R+DL      P C+END Y   D
Sbjct: 590 SEGWLDAFKRRHRIDLKSMTGYPVCYENDMYEEVD 624


>AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein33 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 213 FEVPFVMLFFISSAAFDNSQFIGNQLFPSETALCKVHASVSAVRRVYTAGRY-PFKRLKA 37
           F VP      +  +  DN QFIG  L     ++C + + V+AV  ++T   Y  F   K 
Sbjct: 249 FFVPLFFFVMLIMSDMDNGQFIGEFL----QSICALQSIVNAVVLIFTTPCYRSFVLHKP 304

Query: 36  ARVSLK 19
           AR  L+
Sbjct: 305 ARCRLQ 310


>Z70756-10|CAI46587.1|  228|Caenorhabditis elegans Hypothetical
           protein T06E4.12 protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 456 LMETPAILIPSPTSCAWNHPSLVSGVSFTYPPLPP 352
           L   PA   P+P   A   P L +   F  PP+PP
Sbjct: 84  LAAAPAFAAPAPVFAAPPAPVLAAPAPFLAPPVPP 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,386,565
Number of Sequences: 27780
Number of extensions: 366582
Number of successful extensions: 1122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)