Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29e19
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.34 
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   4.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 435 LIPSPTSCAWNHPSLVSGVSFTYPPLPPALCAN 337
           L+P P SC     S +   + T P LP  L  N
Sbjct: 653 LLPRPISCHTTPDSFIEAPNKTLPSLPSTLTKN 685


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 572 KNWHMPKGID 601
           +NW  PKGID
Sbjct: 32  RNWRKPKGID 41


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 421 HQLRLEPSQSGQRGVFHVPS 362
           ++LR EP + G   + HVPS
Sbjct: 88  YKLRWEPKEYGGVKMLHVPS 107


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 421 HQLRLEPSQSGQRGVFHVPS 362
           ++LR EP + G   + HVPS
Sbjct: 88  YKLRWEPKEYGGVKMLHVPS 107


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 308 VRKDLNLPLKLAHRAGGKGGYVKDTPLTRLGWFQAQLVGE 427
           V++   +   +   A G+G  VK     + G F  Q VGE
Sbjct: 489 VQRGTKMQFCIFRTANGRGWGVKTMKTIKKGSFVTQYVGE 528


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 49  LKRVSTCCVHATHRG 93
           LK +  C  H TH+G
Sbjct: 564 LKMIQACSHHLTHKG 578


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 146 PMNWELSKAAEEMKNNITNGTSKSR 220
           P  W++ KAAEE    ++   S  R
Sbjct: 222 PFAWKILKAAEEAGFGVSEDLSGDR 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,936
Number of Sequences: 438
Number of extensions: 4527
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)