Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29e17
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   1.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   1.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.8  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   7.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 140 LICLQLFKCLAESCHCFINRFIEVFNDII 54
           L+ L  F+C+A S    +NRF +   D+I
Sbjct: 455 LLFLMFFECIAISWAFGVNRFYDGIRDMI 483


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 140 LICLQLFKCLAESCHCFINRFIEVFNDII 54
           L+ L  F+C+A S    +NRF +   D+I
Sbjct: 508 LLFLMFFECIAISWAFGVNRFYDGIRDMI 536


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 24  IDDMANTDPMNDIIKDLNESIDKTMTAF 107
           I D+   D +ND I  LN S    +TA+
Sbjct: 116 ISDLFVFDDLNDYINRLNYSAFVNLTAY 143


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 579 ICRNHHCKLSSFFCHIFLY 635
           IC   +C  +S   HI+ Y
Sbjct: 40  ICERVYCSRNSLMTHIYTY 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,362
Number of Sequences: 438
Number of extensions: 3983
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)