Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29e16
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...   258   5e-70
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.2  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    26   6.9  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.1  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   9.1  

>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score =  258 bits (633), Expect = 5e-70
 Identities = 115/172 (66%), Positives = 141/172 (81%)
 Frame = +1

Query: 241 PLYFDAQATTPMDPRVLDVMLPYLVSYHGNPHSRTHAYGWESEAAVEKAREQVANLINAE 420
           P+Y D QAT+P+D RVLD MLP+    +GNPHSRTHAYGWE+E AVE AR+++A++INA+
Sbjct: 100 PIYMDFQATSPLDYRVLDSMLPFFTGIYGNPHSRTHAYGWEAEKAVENARQEIASVINAD 159

Query: 421 PKEIIFTSGATESNNISVKGVGRFYAPRKKHVITTQIEHKCVLDSCRALEGEGFRITYLP 600
           P+EIIFTSGATESNN  +KGV RFY  RKKH+++ Q EHKCVLDS RAL+ EGF +T+LP
Sbjct: 160 PREIIFTSGATESNNAILKGVARFYKSRKKHLVSVQTEHKCVLDSLRALQEEGFEVTFLP 219

Query: 601 VQQNGIINLKDLEDAITPETSLVSIMTVNNEIGVRQPIEAIGAICKSKKVFF 756
           VQ NG+INL +L DAI P+T  VS+M VNNEIGV QP+E IG IC+ KKVFF
Sbjct: 220 VQTNGLINLDELRDAIRPDTVCVSVMAVNNEIGVCQPLEEIGKICRQKKVFF 271


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 625  LKDLEDAITPETSLVSIMTVNNEI-GVRQPIEAIGAICKSKKVFFSY*CC 771
            L    D+  P  + +  + ++ ++ G+ QP+     ICK+  +FFS  CC
Sbjct: 1902 LSSPSDSTFPLWAKLPRLVISEDVQGISQPLTVYQFICKAPDLFFS--CC 1949


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 310 LVSYHGNPHSRTHAYGWESEAAVEKAREQVANLINAEPKEIIFTSGATES-NNISVKGVG 486
           L S H  PH+     G  +  A    R+ +  L++  P +  FT+   ++    +V+ V 
Sbjct: 540 LPSQHDTPHNSVKLTGSSTTPASVSLRQMIEPLLSRTPPKGEFTNSLDDTPTQSNVEKVD 599

Query: 487 RF 492
           RF
Sbjct: 600 RF 601


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 257 ASKYKGRPTSSCFNENLSFAESEKKLLCSNITTP 156
           ASK    P++   N N++   S++K   + +TTP
Sbjct: 238 ASKNNSAPSADANNGNMTKLVSKEKAFLNTVTTP 271


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = +1

Query: 91  TKNVISVVCKSAIKQKTQLNGNGVVIFEQSNFFSDSANDKFSLKHEEVGR 240
           T+  I     + ++ + + +GNGV+ F  S   +++   +  +  E++GR
Sbjct: 827 TRLAIQTPTGNIVRLREERSGNGVIFFSLSLTINETGEYRALILAEKIGR 876


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,346,301
Number of Sequences: 5004
Number of extensions: 73793
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)