Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29e16
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0529 + 10276063-10277439 263 1e-70
12_01_1062 - 10966940-10967140,10967314-10967413,10968069-109681... 66 4e-11
03_05_0372 - 23580742-23580936,23581004-23581051 31 0.77
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735... 29 4.1
06_03_1237 + 28602250-28604196 29 4.1
10_01_0147 - 1722947-1723168,1723268-1723464,1723654-1723690,172... 28 7.2
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898... 28 7.2
>09_02_0529 + 10276063-10277439
Length = 458
Score = 263 bits (644), Expect = 1e-70
Identities = 118/174 (67%), Positives = 144/174 (82%)
Frame = +1
Query: 235 GRPLYFDAQATTPMDPRVLDVMLPYLVSYHGNPHSRTHAYGWESEAAVEKAREQVANLIN 414
GRPLY D QATTP+DPRVLD MLP+ +S +GNPHSRTH YGWES+AAVE+AR +VA+L+
Sbjct: 57 GRPLYMDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLYGWESDAAVEEARARVASLVG 116
Query: 415 AEPKEIIFTSGATESNNISVKGVGRFYAPRKKHVITTQIEHKCVLDSCRALEGEGFRITY 594
A+P+EI FTSGATE NNI+VKGV RFY R++HV+TTQ EHKCVLDSCR L+ EGF +TY
Sbjct: 117 ADPREIFFTSGATECNNIAVKGVMRFYRDRRRHVVTTQTEHKCVLDSCRYLQQEGFEVTY 176
Query: 595 LPVQQNGIINLKDLEDAITPETSLVSIMTVNNEIGVRQPIEAIGAICKSKKVFF 756
LPV+ +G++++ L DAI P+T LVS+M VNNEIGV QP+E IG ICK K V F
Sbjct: 177 LPVRPDGLVDVAQLADAIRPDTGLVSVMAVNNEIGVVQPLEEIGRICKEKGVPF 230
>12_01_1062 -
10966940-10967140,10967314-10967413,10968069-10968132,
10968301-10968373,10968467-10968612,10969625-10969667,
10969712-10969902,10970706-10970892,10971225-10971384,
10971483-10971616,10972525-10972530
Length = 434
Score = 65.7 bits (153), Expect = 4e-11
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 2/151 (1%)
Frame = +1
Query: 244 LYFDAQATTPMDPRVLDVMLPYLVSYHGNPHSRTHAYGWESEAAVEKAREQVANLIN-AE 420
+YFD AT+ V+ + Y Y+ N H H ++ A E AR +VAN +N A
Sbjct: 10 VYFDNGATSQKPSCVMKTLDEYYRFYNSNVHRGIHVLSAKATDAYESARTKVANFVNAAN 69
Query: 421 PKEIIFTSGATESNNISVKGVGRFYAPRKKHVITTQIEHKCVLDSCRAL-EGEGFRITYL 597
+EI+FT ATE+ N+ G + ++ T EH + + + + G + Y+
Sbjct: 70 SREIVFTRNATEAINLVAYSWGMSNLKQGDEIVLTIAEHHSAIVPWQFVSQKTGATLKYV 129
Query: 598 PVQQNGIINLKDLEDAITPETSLVSIMTVNN 690
+ + G+ +++ L+ ++ +T +V + V+N
Sbjct: 130 GLTKEGVPDIEQLKGLLSNKTKIVVVHHVSN 160
>03_05_0372 - 23580742-23580936,23581004-23581051
Length = 80
Score = 31.5 bits (68), Expect = 0.77
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = -3
Query: 740 LLHIAPIASIGCLTPISLLTVIIDTKLVSGVMASSKSFKFIIPFCWTG 597
LL +AP +I CL I L+ DT L+ V +SKSF+F + C TG
Sbjct: 30 LLDLAPTYAI-CLVTIELVN---DTPLLLCVSRNSKSFQFPLRKCCTG 73
>10_08_0789 +
20569738-20570207,20573425-20573464,20573484-20573536,
20573633-20574212,20574323-20575384,20575631-20575813,
20576112-20576199,20576285-20576532,20576712-20577053,
20579026-20579163,20579521-20579547
Length = 1076
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +1
Query: 181 NFFSDSANDKFSLKHEE----VGRPLYFDAQATTPMDPRVLDVMLPYLVSYHGNPHSRTH 348
N S++ NDK +K EE +G P ++ T P +LP L G+PH H
Sbjct: 774 NTLSEALNDK--IKAEELSLTIGSPKQLYSEFTWLHRPHNQKYILPQLCDQKGHPHCTVH 831
Query: 349 A 351
A
Sbjct: 832 A 832
>06_03_1237 + 28602250-28604196
Length = 648
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 349 AYGWESEAAVEKAREQVANLINAEPKEIIFTSGATESNNISVKGVGRFY--APRKKHVIT 522
++G SEA + +E V N N EP + F T ++ + G GR+Y + K+ I
Sbjct: 352 SHGRASEA-IALFKEMV-NRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIM 409
Query: 523 TQIEH-KCVLD 552
+H C++D
Sbjct: 410 PSADHYACMVD 420
>10_01_0147 -
1722947-1723168,1723268-1723464,1723654-1723690,
1724688-1725584
Length = 450
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 301 LPYLVSYHGNPHSRTHAYGWESEAAVEKAR--EQVANLINAEPKEIIFTS 444
L Y GN +S AYGW S A ++AR E V E +FTS
Sbjct: 105 LRYTTRPEGNTNSNEDAYGWISHALQKQARVLEVVVFCCLFELDHSVFTS 154
>06_01_1096 -
8988463-8989167,8989335-8989361,8989560-8989648,
8989830-8990039,8990877-8991047,8991595-8991777,
8991886-8991969,8992067-8992178
Length = 526
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 205 DKFSLKHEEVGRPLYFDAQATTPMDPRVLDVMLPYLVSYHGNPHSRTHAYGWESEAAVEK 384
+ +++ H+E PL D +A TP P V H H R + GW+ + A ++
Sbjct: 381 ESYAIPHDETPPPL--DMRAATPRKNYAFMTKEPEKV--HHVRHGRPYFNGWDMQHAPQQ 436
Query: 385 AREQ 396
EQ
Sbjct: 437 QPEQ 440
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,822,962
Number of Sequences: 37544
Number of extensions: 406386
Number of successful extensions: 990
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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