Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29e16
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-14|AAC16992.2|  412|Caenorhabditis elegans Hypothetical...   248   3e-66
U23139-11|AAK31490.1|  328|Caenorhabditis elegans Hypothetical p...    78   8e-15
U12964-2|AAL02498.1|  293|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z81132-14|CAB03432.3|  378|Caenorhabditis elegans Hypothetical p...    29   4.8  
AF100306-5|AAC68924.2|  318|Caenorhabditis elegans Hypothetical ...    29   4.8  
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis...    28   8.5  

>AF067211-14|AAC16992.2|  412|Caenorhabditis elegans Hypothetical
           protein B0205.6 protein.
          Length = 412

 Score =  248 bits (608), Expect = 3e-66
 Identities = 110/174 (63%), Positives = 141/174 (81%), Gaps = 1/174 (0%)
 Frame = +1

Query: 238 RPLYFDAQATTPMDPRVLDVMLPYLVSYHGNPHSRTHAYGWESEAAVEKAREQVANLINA 417
           +P+Y D QAT PMDPRV+D MLPY+++  GNPHSRTH+YGW++E  VE+ARE VANLI A
Sbjct: 11  QPIYLDVQATAPMDPRVVDAMLPYMINDFGNPHSRTHSYGWKAEEGVEQAREHVANLIKA 70

Query: 418 EPKEIIFTSGATESNNISVKGVGRFYAPR-KKHVITTQIEHKCVLDSCRALEGEGFRITY 594
           +P++IIFTSGATESNN+++KGV +F     K H+IT Q EHKCVLDSCR LE EGF++TY
Sbjct: 71  DPRDIIFTSGATESNNLAIKGVAKFRKQSGKNHIITLQTEHKCVLDSCRYLENEGFKVTY 130

Query: 595 LPVQQNGIINLKDLEDAITPETSLVSIMTVNNEIGVRQPIEAIGAICKSKKVFF 756
           LPV + G+++++ L  +IT ET LVSIM VNNEIGV QPI+ IG +C+SK V+F
Sbjct: 131 LPVDKGGMVDMEQLTQSITAETCLVSIMFVNNEIGVMQPIKQIGELCRSKGVYF 184


>U23139-11|AAK31490.1|  328|Caenorhabditis elegans Hypothetical
           protein F13H8.9 protein.
          Length = 328

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
 Frame = +1

Query: 406 LINAEPKEIIFTSGATESNNISVKGVGRFYAPRKK--HVITTQIEHKCVLDSCRALEGEG 579
           + N + + ++FTSG TESNN  ++G  R      K  H+ITT IEH  +L+  +  E +G
Sbjct: 1   MFNVDGECVVFTSGGTESNNWVIEGTIRNAKKVSKLPHIITTNIEHPSILEPLKRREEDG 60

Query: 580 -FRITYLPVQQ-NGIINLKDLEDAITPETSLVSIMTVNNEIGVRQPIEAIGAICKSK 744
              +TY+ +    G +  + + DA+T +T LV+IM  NN+ GV QP+  I    + K
Sbjct: 61  EISVTYVSINPLTGFVTSQSILDALTSDTCLVTIMLANNDTGVLQPVSEIFQAIREK 117


>U12964-2|AAL02498.1|  293|Caenorhabditis elegans Hypothetical
           protein F26F4.6 protein.
          Length = 293

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
 Frame = +1

Query: 253 DAQATTPMDPRVLDVMLPYLVSYHGNPHSRTHAYGWESEAAVEKAREQVANLINAEPKEI 432
           D    +P   +V+D +          P S T +Y   S ++   +    A    +EP+  
Sbjct: 72  DLDTDSPNLTKVIDDVASGATGSSSLPSSSTESYSTSSSSSSSSSDLNSAYSSTSEPQAT 131

Query: 433 IFTSGATESNNIS---VKGVGRFYAPRKKHVITTQIEHK 540
             ++  + +N+ +   +KG   ++ PR+ H  +T + HK
Sbjct: 132 SSSAPESSTNSSASPEIKGNRNYHPPREFHGASTMVSHK 170


>Z81132-14|CAB03432.3|  378|Caenorhabditis elegans Hypothetical
           protein T26E4.3 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +1

Query: 196 SANDKFSLKHEEVGRPLYFDAQATTPMDPRVLDVMLPYLVSYHGNPHSR 342
           S ND     H   G P Y + +   P DPR   V   YLV  +   HSR
Sbjct: 218 SKNDFIICTHIHRGEPPYNNHRK--PSDPRFTRVATEYLVDIYEKSHSR 264


>AF100306-5|AAC68924.2|  318|Caenorhabditis elegans Hypothetical
           protein T24C4.5 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 723 YSFNWLSNTYFIIDSHYRYQTGFWRDGIFQI 631
           Y   WL N  FIID  Y+Y + F RD + +I
Sbjct: 229 YEQGWLDNDRFIID--YQYMSEFGRDDLRRI 257


>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 6 protein.
          Length = 1396

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = -3

Query: 722 IASIGCLTPISLLTVIIDTKLVSGVMASSKSFKFII--PFCWTGKY---VILKPSPSKAR 558
           I S+G      LLT++ ++++  G ++ + SF +    P+ +TG     ++     +K R
Sbjct: 516 IGSVGSGKSSLLLTILSESRMTRGNLSVNGSFAYCAQEPWIFTGSIQDNIVFGSEFNKER 575

Query: 557 HESKTHLC 534
           +E+   LC
Sbjct: 576 YENALELC 583


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,327,285
Number of Sequences: 27780
Number of extensions: 406923
Number of successful extensions: 990
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)