Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29e16
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.78 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.78 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.78 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   2.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.6  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 720 SFNWLSNTYFIIDSHYRYQTGFW-RDGIFQIL 628
           +FN LS+T F+ID    ++TG   +D   Q++
Sbjct: 123 AFNCLSDTIFLIDIVVNFRTGIMQQDNAEQVI 154


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 720 SFNWLSNTYFIIDSHYRYQTGFW-RDGIFQIL 628
           +FN LS+T F+ID    ++TG   +D   Q++
Sbjct: 123 AFNCLSDTIFLIDIVVNFRTGIMQQDNAEQVI 154


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 720 SFNWLSNTYFIIDSHYRYQTGFW-RDGIFQIL 628
           +FN LS+T F+ID    ++TG   +D   Q++
Sbjct: 123 AFNCLSDTIFLIDIVVNFRTGIMQQDNAEQVI 154


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 142 QLNGNGVVIFEQSNFF 189
           Q+NGN +  F+ SN F
Sbjct: 157 QMNGNNITNFKNSNIF 172


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 45  NLQNCLIYFIQNV 83
           NL+N LIYFI+++
Sbjct: 215 NLENKLIYFIEDI 227


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 286 VLDVMLPYLVSYHGNPHSRTH 348
           +L +   Y+VS  G  HSR H
Sbjct: 14  LLSIASTYVVSVAGYKHSRRH 34


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 205 HLQNRKKNC 179
           H+Q RKKNC
Sbjct: 392 HMQPRKKNC 400


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 205 HLQNRKKNC 179
           H+Q RKKNC
Sbjct: 392 HMQPRKKNC 400


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 253 DAQATTPMDPRVLDV 297
           D   TTP+D + LDV
Sbjct: 254 DMNGTTPLDEKPLDV 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,721
Number of Sequences: 438
Number of extensions: 5222
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)