Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29e14
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc... 210 1e-55
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni... 73 4e-14
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni... 63 5e-11
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 29 0.69
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 27 3.7
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 6.4
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 26 6.4
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 26 6.4
SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.5
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 25 8.5
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 25 8.5
>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 177
Score = 210 bits (514), Expect = 1e-55
Identities = 101/158 (63%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Frame = +1
Query: 229 MNIRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKM 408
M+IR AR SDL MQ+CNL LPENYQ+KYY YH +SWP LSYVA D KG +VGYVLAKM
Sbjct: 1 MDIRPARISDLTGMQNCNLHNLPENYQLKYYLYHAISWPMLSYVATDPKGRVVGYVLAKM 60
Query: 409 EEDGEDN-RHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAAL 585
EE+ +D HGHITS++V RS+R LGLA++LM Q+ AMVE + AKY+SLHVRKSNRAA+
Sbjct: 61 EEEPKDGIPHGHITSVSVMRSYRHLGLAKRLMVQSQRAMVEVYGAKYMSLHVRKSNRAAI 120
Query: 586 NLYTNSLGFKILEIEPKYYADGEDAYSMMRDLSAFAVD 699
+LY ++L F + IE KYYADGEDAY+M +D S D
Sbjct: 121 HLYRDTLQFDVQGIESKYYADGEDAYAMHKDFSTLKFD 158
>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 180
Score = 72.9 bits (171), Expect = 4e-14
Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
Frame = +1
Query: 247 RPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGH--IVGYVLAKMEEDG 420
+ +DL + + NL L E + + +Y + WP L V E + ++GY++ K E G
Sbjct: 8 KATDLFSFNNINLDPLTETFNISFYLSYLNKWPSLCVVQESDLSDPTLMGYIMGKSEGTG 67
Query: 421 EDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTN 600
++ H H+T++ V + RRLGLA+ +M+ + A +V L VR SN A++ Y
Sbjct: 68 KE-WHTHVTAITVAPNSRRLGLARTMMDYLE-TVGNSENAFFVDLFVRASNALAIDFY-K 124
Query: 601 SLGFKILEIEPKYYAD----GEDAYSMMRDLS 684
LG+ + YY++ ED++ M + LS
Sbjct: 125 GLGYSVYRRVIGYYSNPHGKDEDSFDMRKPLS 156
>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 150
Score = 62.9 bits (146), Expect = 5e-11
Identities = 41/124 (33%), Positives = 62/124 (50%)
Frame = +1
Query: 292 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSH 471
L E Y Y Y WP+ S+VA D +G V+ K + G+I LA+ + +
Sbjct: 23 LSEPYSKYVYRYFVHQWPEFSFVALDND-RFIGAVICKQDVHRGTTLRGYIAMLAIVKEY 81
Query: 472 RRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADG 651
R G+A KL QASL +++ A+ + L N AA++ Y LGF + +YY +G
Sbjct: 82 RGQGIATKL-TQASLDVMKNRGAQEIVLETEVDNEAAMSFY-ERLGFCRYKRLYRYYLNG 139
Query: 652 EDAY 663
DA+
Sbjct: 140 TDAF 143
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 29.1 bits (62), Expect = 0.69
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Frame = +1
Query: 352 SYVAEDEKGHIVGY---VLAKMEEDGEDNRHGHITSLAVKRSHRRLGLA-QKLMNQASLA 519
++V E + IVG E+D +D+ HG H R G+A Q++ N S
Sbjct: 558 AFVEEKNRYLIVGTSTSAFTSNEDDDDDDGHG----------HNRFGVAFQEVANMTSAT 607
Query: 520 M-VECFQAKYVSLHVRKSNRAALNLYTNSLGFKIL 621
+ ++CF+A + + ++ L ++ SL FK L
Sbjct: 608 LQMDCFEASVI-----ECQKSDLGVFLESLSFKTL 637
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 346 GAKKVHGRSNISSDSSLADTISC 278
G K VHG N++S +++D + C
Sbjct: 577 GGKAVHGLVNLASSRNVSDRVKC 599
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -1
Query: 441 VTMTIILTVLFHFCQNISNNMS 376
+ +I+LT+LF+F N+S+ M+
Sbjct: 278 IPFSIVLTILFYFDHNVSSVMA 299
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 157 TYHLVVLEQIEIWINSTSKQCTNFKI*LIGEVHKIKSLEYLL*PNFLKY 11
T H +V + +W+ S S Q T + ++ V K S+E LL P K+
Sbjct: 293 TLHDLVSTRCSVWLTSPSSQRTTKDLEVLNNVLK-DSIEPLLLPTVNKF 340
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 12 YFKKFGYSRYSKDLIL*TSPI 74
YF++FGY+ Y L+L +PI
Sbjct: 343 YFRRFGYNDYQLYLLLSCAPI 363
>SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 87
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -1
Query: 699 INCKSTQISH--HGIRIFSISIVLWLNF 622
I KS+ H HGI IFS SI L+L F
Sbjct: 51 IGVKSSWSRHLIHGINIFSFSISLFLIF 78
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 709 QFYYQLQKHSDLASWNTHLLHQHSTLAQFL 620
Q Y+ + HS + + +HLL H L ++L
Sbjct: 130 QVYHLIDNHSCIQTAVSHLLRNHQALFKYL 159
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -1
Query: 429 IILTVLFHFCQNISNNMSFFIFSYITELGP 340
++LT L H + +N + F+ Y+ +L P
Sbjct: 252 VVLTTLMHMAWALLDNPNLFVEPYVQQLMP 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,124
Number of Sequences: 5004
Number of extensions: 57141
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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