Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29e09
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi... 58 1e-09
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.3
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 28 1.7
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 5.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.1
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 26 6.7
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 26 6.7
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 26 6.7
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 8.9
>SPAC29B12.11c |||human WW domain binding protein-2
ortholog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 58.0 bits (134), Expect = 1e-09
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Frame = +1
Query: 136 ADHGVLIHAGECIILFSDNVSVEFYGNDTPEFKG--IKEGRMYLTTHRMIYNSKKNTDAM 309
++ +L+ EC+ D V++ P K +G + LT R++Y +K
Sbjct: 12 SESDILLLENECMFDCFDGVAISILCKP-PSLKSWTCTKGLLCLTNQRLVYIAKDTDCDF 70
Query: 310 RSFSFPFIALQDVTVEQPMFSANCIKGKVRAQPNGNFIGEVKFKLTFKSGGAIEYGQA 483
+ F P L+D + QP F AN G V PNG E + KL F GG + +A
Sbjct: 71 KDFQSPVANLKDTKLNQPFFGANYYSGTVMPVPNGGIPCEAEVKLQFNEGGIFNFVEA 128
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +1
Query: 625 PPYSAFPD--QPPP--NSVFVSNTPPPYPGVTGASYP 723
PP SA QPPP +S VSN P P P + G S P
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 121 LNTAHADHGVLIHAGECII--LFSDNVSVEFYGNDT 222
LN A +D G I A + + L S N +EFYG+DT
Sbjct: 114 LNIAESDTGSSIEAQDSWVYQLNSFNKKIEFYGDDT 149
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 79 LNVIYNQHNNCIMSLNTAHADHGVLIHAGECI-ILFSDNVS 198
L+ + NQ + S+N ADH L+ A EC IL +D+ S
Sbjct: 1396 LHELVNQFLTGVASINHPIADHVFLLCAQECCRILLTDSKS 1436
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 625 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 723
P + P PP + PPP PGV GA P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.8 bits (54), Expect = 6.7
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -3
Query: 727 RSDKKLQSRQGRE-VGYSTQILSLVEVGLEKQNKVAPIHNILVEEVHMLVVVRLATVQSV 551
R +K R+ RE V +L+ +++GLE H + E+ + LAT +
Sbjct: 371 RERRKANQRKQREIVRMQMGMLAPMDIGLE--------HEAMGEDS----LFGLATAEKH 418
Query: 550 GYKEVAKHQLPYDEKQDEQLLT 485
G KE+ LP E DE++ T
Sbjct: 419 GLKELENGTLPVTESVDEEVST 440
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 223 PEFK-GIKEGRMYLTTHRMIYNSKKNTDAMRSFSFP 327
PEF+ G+ EGR + +Y +K + ++SF+ P
Sbjct: 271 PEFQLGVWEGRNMYSFFAFMYVDEKEWEKLKSFNVP 306
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 661 LVEVGLEKQNKVAPIHNIL--VEEVHMLVVVRLATVQS-----VGYKEVAKHQLPYDEKQ 503
L E+ +E ++AP NI+ + + L L T + + Y ++ + PYD ++
Sbjct: 178 LRELDIELMRRLAPRVNIIPAIAKADSLTAQELQTTKEMINADIEYYKIPVYDFPYDIEE 237
Query: 502 DEQLL 488
DE+ +
Sbjct: 238 DEEAI 242
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 625 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASY 720
PPY + P +P P +V S++ P +Y
Sbjct: 356 PPYPSAPTRPTPPTVQTSSSAAPVDSAEPVAY 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,957
Number of Sequences: 5004
Number of extensions: 60951
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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