Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29e05
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    29   0.54 
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    27   2.9  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   6.6  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    26   6.6  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   8.7  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   8.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   8.7  

>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 373 PHNEEQD*TVRRSCGNRRWECYTNGGALFNC 465
           P+ ++++  +  S G R W C TN G L+ C
Sbjct: 139 PYLDDKEFIIDISAGLRHWICVTNEGNLYGC 169


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 461 IATLNKKLVYELLSSRLIALNHYISFLQNEGKITELTDLLTML 589
           I  +  +L ++ L S LI  NH++SF   + +I   TDL  M+
Sbjct: 358 IIYIQMQLCFDDLESYLIRRNHFLSFPLCKEQIQLHTDLFRMI 400


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/36 (36%), Positives = 26/36 (72%)
 Frame = -1

Query: 582 VSKSVSSVIFPSFCRKLM*WFSAMSLEDNNSYTNFL 475
           V K VS + F +  ++L+ + + ++LED+++YTNF+
Sbjct: 182 VLKLVSQLSFMTDRKELV-YTTCLALEDDDAYTNFV 216


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 212 IPLMSLVTPKVLDLILLAQS-GKDPAQEQSQESPETVAVTLKRL 340
           +PL  LVTP + + I+LA++ G D +   S    E  A  + +L
Sbjct: 162 LPLTYLVTPNIPEAIVLAKNQGLDISNINSVSDMERCAAVIHKL 205


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 17  YQR*SLNMDDDDYWNTSDTKAKAFSFDDDVLSPQEILAIGQKTYPGQKE 163
           Y+   LN  DD   ++ D +    S +D  +S  E L+  +  YP +KE
Sbjct: 160 YEHTHLNSRDDSNPSSCDRETFFLSDEDSEISLMEGLSSIENGYPDEKE 208


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 617 HFQHAVKTQGNNVDGLLRKVTNILANHFNQPGVD 718
           H Q  ++ Q NN+  L  ++   L  H    GVD
Sbjct: 377 HAQPGIRRQVNNLRELTLRIDEPLVKHLQMEGVD 410


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = -2

Query: 284 LDLSLIVLKESNLKLWV*LNSLMESEQPSPY*YCSN*K 171
           L LSL  LKESN K+   L+SL +S + S   Y S  K
Sbjct: 817 LSLSLQKLKESNEKMSNDLHSLQKSLEKSGIEYSSRIK 854


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
 Frame = +2

Query: 212 IPLMSLVTPKVL-DLILLAQSGKDPAQEQ-SQESPETVAVTLKRLVLGRRCALHVHRTMK 385
           +P M+    +VL ++ LLA    D   E  S +  +   ++L+ L+L  + +  V R +K
Sbjct: 47  LPSMTSELVEVLIEVGLLAFKHDDSKSEFISPKMLKEAHLSLQALMLILKRSPTVLREIK 106

Query: 386 SKTELLDGAV--AIGDGNAILTVVLFLIATLNKKLVYELLSSRLIALNHYISFLQ 544
           S   LLD  +   I     I  + LF       KL+Y+L+S +    + Y SF++
Sbjct: 107 SSVTLLDWILPRTISLFADIRFIKLFDSLKEFHKLIYQLISEKSFLWDLYASFMR 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,358
Number of Sequences: 5004
Number of extensions: 58253
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)