Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29e05
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543... 29 3.9
06_02_0324 + 14414422-14414541,14415271-14415347,14415807-144159... 29 3.9
03_05_0089 - 20669197-20669280,20669944-20670030,20670143-206702... 29 3.9
12_02_0775 - 23049842-23051299 29 5.2
06_01_0588 - 4224348-4224516,4224674-4224767,4224872-4225490,422... 28 9.1
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 28 9.1
03_03_0141 + 14779557-14779600,14779686-14779749,14779827-147798... 28 9.1
03_02_0352 + 7749902-7751788,7752547-7752615 28 9.1
01_01_1121 + 8893177-8893199,8893260-8893287,8893656-8893730,889... 28 9.1
>10_02_0114 +
5431578-5431724,5432753-5432797,5433572-5433691,
5433773-5433880,5434900-5435073,5435366-5435503,
5435879-5435986,5436131-5436238,5436340-5436488,
5437594-5437747,5437980-5438140,5438221-5438427,
5438575-5438758,5438846-5438929,5439023-5439222,
5439314-5439373,5439461-5439665
Length = 783
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 437 ILTVVLFLIATLNKKLVYELLSSRLIALN-HYISFLQNE 550
I+ V+FL AT+ LV E LS+ L AL H++ F QN+
Sbjct: 724 IIGAVIFLFATIGVLLVMETLSAFLHALRLHWVEF-QNK 761
>06_02_0324 +
14414422-14414541,14415271-14415347,14415807-14415994,
14416276-14416373,14416633-14416766,14416852-14416953,
14417931-14418038,14418335-14418465,14420068-14420142,
14420439-14420518,14421229-14421320,14422333-14422634,
14422717-14422856
Length = 548
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 275 KDPAQEQSQESPETVAVTLKRLVLGRRCALHVHRTMKSKTELL 403
+D AQE+ S V V L+ +GR+ L HR+ S ++ L
Sbjct: 451 RDAAQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQAL 493
>03_05_0089 -
20669197-20669280,20669944-20670030,20670143-20670261,
20670838-20671076,20671159-20671215,20671564-20672195,
20673172-20673213,20675849-20676133
Length = 514
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 419 IGDGNAILTVVLFLIATLNKKLVYELLSSRLIALNHYISFLQNEGKITE--LTDLLTML 589
+G GN + T++ ++ +L+ ++ L +YIS+L EG++ + DL +L
Sbjct: 346 LGAGNPKAAYFSVWVVTISCAIISAILAVVILCLRNYISYLFTEGEVVSNAVADLCPLL 404
>12_02_0775 - 23049842-23051299
Length = 485
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 425 DGNAILTVVLFLIATLNKKLVYELLSSRLIALNHYISFLQNEGKITEL 568
DG+ L VV+F L Y L+ R+ + H++SF+ I L
Sbjct: 4 DGSPPLRVVIFPWLAFGHLLPYMELAERMASRGHHVSFVSTPRNIARL 51
>06_01_0588 -
4224348-4224516,4224674-4224767,4224872-4225490,
4225609-4225734,4225819-4226487,4226728-4226853,
4226940-4227266,4227366-4227439,4228469-4228583,
4228871-4229164
Length = 870
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/70 (22%), Positives = 36/70 (51%)
Frame = +2
Query: 236 PKVLDLILLAQSGKDPAQEQSQESPETVAVTLKRLVLGRRCALHVHRTMKSKTELLDGAV 415
P++ L AQS + + + S + +L +++ + A+ + ++ K + L
Sbjct: 431 PQIDGATLSAQSKQITSTGHREVSSSDRSASLTHVIVNQAVAMVPSQELQPKVDGLTDTS 490
Query: 416 AIGDGNAILT 445
++G+GNAIL+
Sbjct: 491 SLGNGNAILS 500
>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 596 SPDAAMAHFQHAVKTQGNNVDGLLRKVTNILANHFNQPGVDAHQ 727
SPD A+F H VKT ++ ++ + + N+ N P + H+
Sbjct: 2413 SPDLHFANFLHMVKTMADS-GTTAEQIESFIVNNQNVPDLPEHE 2455
>03_03_0141 +
14779557-14779600,14779686-14779749,14779827-14779860,
14780308-14780438,14780655-14780728,14780869-14780947,
14781054-14781143,14781401-14781474,14782317-14782404,
14782654-14782780,14782864-14782968,14783446-14783569,
14783651-14783702,14784150-14784255,14784770-14784831,
14784912-14784956,14785527-14785625,14785772-14785924
Length = 516
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 186 LLELKMLSSFCPGYVFCPIAKISCGDNTSSSKL 88
LLE+ LS+ P V + K SCGDNT + L
Sbjct: 25 LLEIAALSTVVPAVVV--LRKWSCGDNTRKNSL 55
>03_02_0352 + 7749902-7751788,7752547-7752615
Length = 651
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 74 KAKAFSFDDDVLSPQEILAIGQKTYPG 154
+ + F+FD +V P++ L IG + PG
Sbjct: 477 RIRKFNFDGNVCQPEDTLMIGNEEVPG 503
>01_01_1121 +
8893177-8893199,8893260-8893287,8893656-8893730,
8894748-8894813,8894917-8894959,8895102-8895150,
8895899-8895992,8896078-8896130,8896921-8897005,
8897242-8897344,8897421-8897513,8897985-8898051,
8898309-8898375,8898463-8898516,8898632-8898766
Length = 344
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 660 PSTLLPCVLTACWKCAIAAS 601
P+TL P +L W+C IA S
Sbjct: 193 PTTLSPTILNVIWRCEIARS 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,680,802
Number of Sequences: 37544
Number of extensions: 388362
Number of successful extensions: 1267
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -