Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29e05
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective sperm...    64   8e-11
Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical p...    29   2.7  
AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    28   6.2  
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen...    28   8.1  
AF016688-1|AAB66077.3|  700|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective
           spermatogenesis protein39, isoform a protein.
          Length = 522

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 37/134 (27%), Positives = 68/134 (50%)
 Frame = +2

Query: 308 PETVAVTLKRLVLGRRCALHVHRTMKSKTELLDGAVAIGDGNAILTVVLFLIATLNKKLV 487
           P T+  ++KR++ G    L  +R+++ KT+LL  AVA  D N I  +V+FL  TL + + 
Sbjct: 167 PLTIEASIKRMLQGHTVTLDYYRSLRDKTQLLKQAVATYDNNTIFKIVIFLERTLKENIF 226

Query: 488 YELLSSRLIALNHYISFLQNEGKITELTDLLTMLGRSPDAAMAHFQHAVKTQGNNVDGLL 667
            +++  +  A   Y   LQ  G+  ++   L  +G+   A++  F+ A +    N D  +
Sbjct: 227 CKIMDGQKSACRVYTRHLQITGEWDKMNKFLRSIGQYQHASVIEFE-ATRKYKRNPDKRV 285

Query: 668 RKVTNILANHFNQP 709
             +  +L   F+ P
Sbjct: 286 PLLRTMLHGSFSIP 299


>Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical
            protein Y102A5A.1 protein.
          Length = 1274

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 25/71 (35%), Positives = 34/71 (47%)
 Frame = +2

Query: 365  HVHRTMKSKTELLDGAVAIGDGNAILTVVLFLIATLNKKLVYELLSSRLIALNHYISFLQ 544
            H H  +KS      GA+A+G+ N  L  +L  I T  KK  Y LL     AL   I +  
Sbjct: 899  HHHEDLKSAAAQALGALAVGNLNVYLPFILEQIRTQPKK-QYLLLH----ALKEVIVWES 953

Query: 545  NEGKITELTDL 577
            +  + T+ TDL
Sbjct: 954  SSEESTKSTDL 964


>AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical
            protein Y102A5A.1 protein.
          Length = 1274

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 25/71 (35%), Positives = 34/71 (47%)
 Frame = +2

Query: 365  HVHRTMKSKTELLDGAVAIGDGNAILTVVLFLIATLNKKLVYELLSSRLIALNHYISFLQ 544
            H H  +KS      GA+A+G+ N  L  +L  I T  KK  Y LL     AL   I +  
Sbjct: 899  HHHEDLKSAAAQALGALAVGNLNVYLPFILEQIRTQPKK-QYLLLH----ALKEVIVWES 953

Query: 545  NEGKITELTDL 577
            +  + T+ TDL
Sbjct: 954  SSEESTKSTDL 964


>AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical
           protein T15B7.13 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 705 WLKWFARILVTFRSKPSTLLPCVLTACWKCAIAASGLLPSMVSKSVSSV-IFPSF 544
           W   F  IL+TF +  S ++ C++++ ++  I     +P  V + + SV IF SF
Sbjct: 301 WTFQFIEILLTFNASTSFIIYCIMSSQFR-EIFVRLFVPESVKQRMQSVEIFDSF 354


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
           protein F32H2.5 protein.
          Length = 2586

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +2

Query: 566 LTDLLTMLGRSPDAAMAHFQHAVKTQGNNVDGLLRKVTNILANH 697
           LTD+LT LG SPD  + H    +   G    G+ R+ T  LA H
Sbjct: 576 LTDVLTALGVSPDGIIGHSTGEMGC-GYADGGITREQTMRLAYH 618


>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
           protein.
          Length = 1603

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
 Frame = +2

Query: 287 QEQSQESPETVAVTLKRLVLGRRCALH----VHRTMKSKTE-----LLDGAVAIGDGNAI 439
           QE  Q +PETV +  + + + R C +     VH T+ +K E     +++ ++A+      
Sbjct: 341 QEHEQNTPETVHLIARAVRMFRMCTIEELKKVHTTIYTKAEKKVQLVIETSIAVA---GT 397

Query: 440 LTVVLFLIATLNKKLVYELLSSRLIALNHYISFLQNEGKITELTDLLTMLGRSP 601
              +  LI    KK +  L ++ L+      S  +       + DLL  L +SP
Sbjct: 398 KNTIQHLIHHFEKKSITPLRAAELLK-----SVQETLYPSEHIADLLIQLAQSP 446


>AF016688-1|AAB66077.3|  700|Caenorhabditis elegans Hypothetical
           protein F18A12.5 protein.
          Length = 700

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 457 KEHHR*YSIPISYCHSSV*QFSLALHCA 374
           +EHH+ YS  ++    ++ QF+LA  CA
Sbjct: 659 QEHHQHYSFRVNGAFKNMPQFALAFECA 686


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,615,107
Number of Sequences: 27780
Number of extensions: 332633
Number of successful extensions: 919
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)