Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29e04
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    28   1.3  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    27   2.3  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   3.0  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   4.0  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.2  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   6.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.2  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   9.2  
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    25   9.2  

>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 79  PVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYL 201
           PVI  A+ I E SN    PPP  V+      T   +Y EYL
Sbjct: 33  PVIYNASNITEVSNSTTVPPPPFVNTTAPNGTCLGNYNEYL 73


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 511 LVCF--PEDTKEIYKNN-SVLAKQYINIAYNFLYG 606
           L+C   PED KE++KN+ SV      NI Y   YG
Sbjct: 172 LICLFAPEDAKEVFKNSKSVWELIQRNIKYAVSYG 206


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 494 PAPAYIILLINPPLSPNMKPVRP 426
           P+PA+ + L +P  +PN+ PV P
Sbjct: 255 PSPAHPVDLSSPETAPNISPVSP 277


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = -2

Query: 482 YIILLINPPLSPNMKPVRPPIATAPYL-----TSLFSSSRK 375
           Y   ++  P   N+ P+ PP A+ PY      TSLF S RK
Sbjct: 311 YTSNIVENPSEDNLSPLPPP-ASGPYSQEEEETSLFKSQRK 350


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 524 GKQTSPIAVVPAPAYIILLINPPLSPNMKPVRPP 423
           G+  +  A+     YI+L + PP SP   P RPP
Sbjct: 415 GRLLAAAAIARICTYIMLYLKPPSSP--WPTRPP 446


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +1

Query: 118 NGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALREQVQTFVD 297
           N P+   P   +  PLY +P +       A A  Q+ ++  +   P    +++Q+  F D
Sbjct: 318 NSPSVSKPPSSATGPLYHSPQSSLTNSSVASADVQERTHNTNGASP----IQDQISEFTD 373

Query: 298 Q 300
           Q
Sbjct: 374 Q 374


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 85  IKAAAPINEE-SNGPAKPPPMRVSELPLYETPHADYAEYL 201
           I A  P NEE + GP  P     SE  +++TP  +  + L
Sbjct: 557 IVAEGPNNEEETKGPVIPETQETSEQQVHKTPSPEKQKVL 596


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 39   KSGDEFYGGYCFGSGYQSGRP 101
            + G E YGG   G GY +G P
Sbjct: 942  RGGHEGYGGRSRGGGYSNGPP 962


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 259 VRALREQVQT----FVDQTDFIKHSIQDNYHEFQDKSEWIFKYLREEENK 396
           VR L+E  +T    ++D  ++I+  +QD   + Q + +     ++EEE K
Sbjct: 23  VRHLQESTETDTSRYMDMENYIQKRVQDELKQLQLRQKKAIDAIQEEEWK 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,285,968
Number of Sequences: 5004
Number of extensions: 70099
Number of successful extensions: 253
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)