Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29e04
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           33   0.33 
01_03_0259 - 14312197-14312259,14312384-14312456,14312651-143127...    31   0.77 
02_02_0581 + 11770511-11770527,11770754-11771612,11771652-117717...    30   2.4  
06_03_0854 + 25400855-25403741,25406174-25407708                       29   4.1  
10_08_0328 - 16805296-16806121,16806493-16807274                       28   7.2  
10_08_0213 - 15912048-15912716                                         28   7.2  
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171     28   7.2  
01_04_0012 - 15075505-15075636,15075719-15075784                       28   7.2  
11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340           28   9.5  

>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 515 TSPIAV-VPAPAYIILLINPPLSPNMKPVRPPIATAPYLTS 396
           T+P+A+  PAP   +  + PPL P      PP+AT P L +
Sbjct: 421 TAPLALRAPAPHLCVSRMPPPLVPTPPAHAPPVATPPTLAT 461


>01_03_0259 -
           14312197-14312259,14312384-14312456,14312651-14312754,
           14313073-14313192,14313278-14313364,14313925-14314023,
           14314110-14314203,14314298-14314368,14315258-14316040
          Length = 497

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +1

Query: 73  LVPVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALL 252
           L P+  +++  +  S  P+ PPP   S     + P + Y+    A A    TSY  S  L
Sbjct: 34  LAPLPSSSSLADASSPPPSPPPPHPSSSSAAAQGPSSSYSAAAAAGAGGASTSYASS--L 91

Query: 253 PPVRALR 273
           PP R  R
Sbjct: 92  PPSRLRR 98


>02_02_0581 +
           11770511-11770527,11770754-11771612,11771652-11771749,
           11772903-11773631,11775159-11775231,11775698-11776066,
           11777009-11777038
          Length = 724

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
 Frame = +1

Query: 46  VMSSMGAIALVPVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQK 225
           V+    A+  +P I A    N+   G    P  R    P   T H  YAEY+     +  
Sbjct: 286 VIMDPSAVGSMP-ISANQDTNKNDIGVDSLPTKRGVVFPFRNTHHVSYAEYIRDLEFKPL 344

Query: 226 TSYLKSALLPPVRALREQV-QTFVDQTDFI 312
             Y+K   +  V   R++V +   ++  F+
Sbjct: 345 IEYIKHTPVMLVGPTRQRVYRLMTEEAKFV 374


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 494 PAPAYIILLINPPLSPNMKPVRPPIATAP 408
           PAPA ++LL  PP S ++ PV   +A  P
Sbjct: 226 PAPAPLLLLPAPPPSSDVSPVTVQVAAPP 254


>10_08_0328 - 16805296-16806121,16806493-16807274
          Length = 535

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 185 SACGVSYNGS--SDTRMGGGFAGPFDSSLIGAAALIT 81
           SA G SYN S  S    G GF G F S+L G   L++
Sbjct: 413 SALGTSYNCSLHSVYLAGNGFTGVFPSTLEGCKTLVS 449


>10_08_0213 - 15912048-15912716
          Length = 222

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 60  GGYCFGSGYQSGRPYQRG 113
           GGY  GSGY SGR Y +G
Sbjct: 162 GGYGSGSGYGSGRGYGQG 179


>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
          Length = 1054

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 497 VPAPAYIILLINPPLSPNMKPVRPPIATAPY 405
           +P P  ++L + PP  P + P+ P +A A +
Sbjct: 85  LPLPPPVLLYLQPPPPPPLLPLLPKVAAATF 115


>01_04_0012 - 15075505-15075636,15075719-15075784
          Length = 65

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 449 PNMKPVRPPIATAPYLTSLFSSSRKYLKIH 360
           P  +P RPP A AP L  L  +S    +IH
Sbjct: 33  PRRRPCRPPTADAPPLQQLRPNSAWMFRIH 62


>11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340
          Length = 369

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 124 PAKPP-PMRVSELPLYETPHADYAEYLEAKAHEQKT 228
           P +PP P  +S LP Y T  AD  E  E +A+E+++
Sbjct: 17  PTRPPQPPSLSLLPAYVTKAADDEECEEWQAYEEES 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,724,408
Number of Sequences: 37544
Number of extensions: 476171
Number of successful extensions: 1630
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)