Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29e04
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine rece...    30   1.6  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    30   1.6  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    30   1.6  
AF024499-6|AAB70354.1|  560|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z81048-4|CAB02844.1|  219|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p...    28   8.6  

>U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein77 protein.
          Length = 313

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 496 TTAMGLVCFPEDTKEIYKNNSVLAKQYINIAYNFLYGVK 612
           TTAM L  + E  + IY + + L   Y  + YNFL+G+K
Sbjct: 94  TTAMNLKVYNE-FQSIYLSINRLVAIYFPLKYNFLFGIK 131


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = +1

Query: 31  MLRKVVMSSMGAIALVPVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYLEAK 210
           M  KV M+   +  + PV+  + PI+  SNGP++ P    S L  +  P     E   + 
Sbjct: 502 MFAKVAMNRKTSNPVPPVLNQSVPISITSNGPSRHPSS--SSLTTFRKPSTSNRERGVSW 559

Query: 211 AHEQKTSYLKSA----LLPPVRAL 270
           A E     L++     L+ PV+ +
Sbjct: 560 ADEPNEQSLEAVPQEFLMMPVKEM 583


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = +1

Query: 31  MLRKVVMSSMGAIALVPVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYLEAK 210
           M  KV M+   +  + PV+  + PI+  SNGP++ P    S L  +  P     E   + 
Sbjct: 502 MFAKVAMNRKTSNPVPPVLNQSVPISITSNGPSRHPSS--SSLTTFRKPSTSNRERGVSW 559

Query: 211 AHEQKTSYLKSA----LLPPVRAL 270
           A E     L++     L+ PV+ +
Sbjct: 560 ADEPNEQSLEAVPQEFLMMPVKEM 583


>AF024499-6|AAB70354.1|  560|Caenorhabditis elegans Hypothetical
           protein F42G2.2 protein.
          Length = 560

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
 Frame = +1

Query: 220 QKTSYLKSALL--PPVRALREQ-VQTFVDQTDFIKHSIQDNYHEFQDKSE-----WIFKY 375
           Q   YLK ALL  P  R  + Q V + +++T F     +  +   +D S      W F Y
Sbjct: 472 QDVVYLKDALLLSPTFRQFKAQFVNSDINETIFDDAFFRYPFRRIEDPSSGLPNIWFFPY 531

Query: 376 LREEENKEVRY 408
              EE+ ++RY
Sbjct: 532 TDVEEDLQIRY 542


>Z81048-4|CAB02844.1|  219|Caenorhabditis elegans Hypothetical
           protein C41G7.6 protein.
          Length = 219

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -2

Query: 530 SSGKQTSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAP 408
           S+ K T+P A  PAPA       PP +P+  PV P  A AP
Sbjct: 34  SASKMTAPTA--PAPA-------PPAAPDAPPVAPDAAAAP 65


>Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical
           protein F36D1.3 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 444 YEACETTHCNSSISYFFIFFLAQILKDPF*LILEFVVVIL--NGVFDEIC 301
           ++A +TT  +S   + F+ FL   + + F +I +F+VV +   G+   IC
Sbjct: 48  FDANQTTMASSIQKHLFMAFLFMQIANFFYIITDFIVVRIPATGILTSIC 97


>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical protein
            T11G6.5 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 476  ILLINPPLSPNMKPVRPPIATAPYLTSLFSSSRKY 372
            +++++PP  P+ K ++PP+A  P +++L      Y
Sbjct: 1134 VIILSPPPHPSQKKIQPPVA-PPGISNLNRPGNNY 1167


>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
            protein T11G6.5 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 476  ILLINPPLSPNMKPVRPPIATAPYLTSLFSSSRKY 372
            +++++PP  P+ K ++PP+A  P +++L      Y
Sbjct: 1134 VIILSPPPHPSQKKIQPPVA-PPGISNLNRPGNNY 1167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,152,777
Number of Sequences: 27780
Number of extensions: 394667
Number of successful extensions: 1271
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)