Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29e02
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    31   0.25 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   2.4  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    27   2.4  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    26   7.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.5  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   9.5  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   9.5  
SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi...    25   9.5  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -3

Query: 427 IAAT-TPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPK-NAITNAMPPTII 254
           +A T TP+   +      SFS+ +T      VTS  + S++ P     N+ T  +PPT  
Sbjct: 30  VATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTS 89

Query: 253 QATGATL 233
             T  T+
Sbjct: 90  MNTTTTV 96



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -3

Query: 472 NVSWSCWKVLFIQFGIAATTPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHP 293
           NV+ + +     +    + T +  T+ I P  S S  +T+  +   TSM   + + P   
Sbjct: 43  NVTTTSFSSASTETSTHSVTSTNITS-IVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTS 101

Query: 292 KNAITNAMPPT 260
            N  T   PPT
Sbjct: 102 LNTTTTTAPPT 112


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -3

Query: 418 TTPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPKNAITNAMPPTIIQATGA 239
           TTP   T TITP V  + I T M  A +T M+       +     +  A   T ++ T  
Sbjct: 108 TTPMVETTTITPMVETTTI-TPMVEAMITLMEETMTTPMEETTTILPMAAMTTPMEETTT 166

Query: 238 TLKLVSDRTV 209
           T  +V   T+
Sbjct: 167 TTPMVETTTI 176


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 246 VACMIVGGIAFVIAFF 293
           + C+IVGG+A+V+ FF
Sbjct: 449 LGCVIVGGLAYVVMFF 464


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -2

Query: 464 LVLLEGLVHPVRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEER 285
           ++LLE L++   +   + +EI  HH      + H H HED     H   + D    ++  
Sbjct: 153 ILLLEVLLNRYVEW-RFGMEIGDHHGPTLGAKQHSHSHEDGAHGVHEHPVYDIEECADGV 211

Query: 284 NNEC 273
            +EC
Sbjct: 212 EHEC 215


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 571  QGVVEQHVMGRVKDRYEPGPVGPQQLN 491
            Q VV++ V   VK+   P P  PQ LN
Sbjct: 1165 QNVVDESVTRVVKELPVPAPAAPQTLN 1191


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 725 VAGVVREAQSEDDGHQFNGGDHD 657
           + G++ E Q+ DD  + NG D D
Sbjct: 131 IPGMITENQTNDDAKEVNGSDVD 153


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 446 LVHPVRDSSNYSVEIHKH-HYAQ 381
           LVH V ++  YSV + +H HY Q
Sbjct: 287 LVHLVHETLQYSVRLEQHFHYTQ 309


>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 356 QHEDRVGDKHAVALPDGTAASEERNNECDASNNHTGHRRYPE 231
           +H+  V  KH  ALPD         N+ ++ ++ + +   PE
Sbjct: 50  EHQKFVLKKHLEALPDALVRLRNATNDLESISSDSAYEGTPE 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,147
Number of Sequences: 5004
Number of extensions: 59146
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)