Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29e02
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0707 - 20212190-20214592 33 0.27
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 33 0.27
05_04_0420 + 21106562-21106657,21106851-21107056,21107175-21107664 33 0.35
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 32 0.61
06_03_1510 + 30665857-30666038,30666137-30666236,30666358-306664... 31 1.1
04_04_0020 + 22182649-22182829,22183900-22183999,22184415-221844... 31 1.1
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 30 1.9
10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334 30 2.5
01_02_0090 + 11012325-11012463,11012543-11012797,11013001-110130... 30 2.5
05_04_0153 + 18536874-18537266,18537369-18537436,18537511-185377... 29 3.3
07_01_0183 + 1297445-1297796,1297896-1298424,1298548-1298630,129... 29 5.7
05_01_0214 - 1615519-1616775 29 5.7
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 29 5.7
01_06_1367 - 36711738-36711774,36711962-36712686,36713217-367132... 29 5.7
09_04_0386 + 17190016-17190170,17190234-17190318 28 7.6
07_03_1193 - 24702135-24702421,24702835-24703160,24703240-247039... 28 7.6
08_01_0389 + 3437383-3437651,3438279-3438396,3438914-3439018,343... 28 10.0
06_03_0963 + 26368959-26369462,26370900-26371205 28 10.0
05_04_0421 + 21114569-21114664,21115042-21115223,21115376-21115640 28 10.0
05_02_0120 - 6797954-6798970,6799466-6799951 28 10.0
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 28 10.0
>08_02_0707 - 20212190-20214592
Length = 800
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -2
Query: 401 HKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEERNNECDASNNHTGH 246
H H ++ H H HED HA+ + A E + + + S++H H
Sbjct: 504 HSHSHSHSHSHSHVHGHEDHHNHDHALQGVNHNGACCEHHGDANKSHHHDHH 555
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 368 CHQHQHEDRVGDKHAVALPDGTAASEERNNECDASN 261
C + H+D +K + PDG AAS NN D+S+
Sbjct: 1930 CLDYPHDDHNSEKEDIHQPDGYAASPGNNNHFDSSH 1965
>05_04_0420 + 21106562-21106657,21106851-21107056,21107175-21107664
Length = 263
Score = 32.7 bits (71), Expect = 0.35
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 219 SETSFRVAPVACMIVGGIAFVIAF-FGCCGAIRESNCMLVTYAIFML--VLMALKLTLGV 389
SET R+ V C + I VIAF GAI ESNC+LV F VL + LG+
Sbjct: 86 SETK-RIVGVVCAVFSWITAVIAFVLFLDGAIVESNCVLVRGGFFASAGVLTLITTALGM 144
Query: 390 MVFVNL 407
+ L
Sbjct: 145 TSYFML 150
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 31.9 bits (69), Expect = 0.61
Identities = 21/57 (36%), Positives = 26/57 (45%)
Frame = -2
Query: 434 VRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEERNNECDAS 264
V SS+ S+E H +HY G H HQ D VG L + A E + DAS
Sbjct: 117 VGSSSSDSLEHHSNHYCNGGHHHHGHQCYDSVGLVSTPKLSSISGAKTE-TSSMDAS 172
>06_03_1510 +
30665857-30666038,30666137-30666236,30666358-30666438,
30666514-30666618,30666722-30666916,30667440-30667501,
30667870-30667885,30668007-30668068,30668933-30668951
Length = 273
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 249 ACMIVGGIAFVIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVFVN 404
A M G ++ GC A S C L Y I +V+M L+ L +F N
Sbjct: 65 ALMAAGLFYCLLLLAGCVAAEINSPCFLCFYTILAVVMMLLEAALAADLFFN 116
>04_04_0020 +
22182649-22182829,22183900-22183999,22184415-22184491,
22184718-22184809,22188655-22189767
Length = 520
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 401 HKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEERNNECDAS 264
H+HH + H HE+ + A A DG +S+E ++E + S
Sbjct: 474 HRHHPQPPPSRPHYQYHENNIAVAAAAAASDGEQSSDEEDDEEEES 519
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Frame = -2
Query: 320 ALPDGTAASEERNNECDASNNHTGHR-----RYPEAG 225
ALPD +R E D S NHT H R+PE G
Sbjct: 663 ALPDSGHGERKRTPEADPSRNHTNHSDPKDDRHPEDG 699
>10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334
Length = 664
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 320 QLHACHLRDL-HAGVDGTETDLGRNGVCESRRSSCCYPELD 439
+L+AC L AG + T GR G +S CCYP D
Sbjct: 147 RLYACEDSSLCRAGCEDVAT-CGRGGAAAGAKSGCCYPLSD 186
>01_02_0090 +
11012325-11012463,11012543-11012797,11013001-11013081,
11013164-11013234,11013400-11013432,11015658-11016047
Length = 322
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 18 LVGPHVDLQIYYHLHISAQLNNKMGCGEFLVKY 116
+V +VDL + Y HI+ ++ N+ G ++L KY
Sbjct: 205 VVAHNVDLLVKYQAHINVEIVNRDGMEKYLFKY 237
>05_04_0153 +
18536874-18537266,18537369-18537436,18537511-18537721,
18537918-18538036,18538103-18538172,18538260-18538331,
18538472-18538585,18540633-18540698
Length = 370
Score = 29.5 bits (63), Expect = 3.3
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +2
Query: 149 GRSRSAGPR--IGGSFTI-R*HRDRSVRDQLQGSA-GGLYDCWRHRIRYCVLRMLRCHQG 316
GRSR AGPR +GG + D S R + +A LY W+ R+ Y R +R G
Sbjct: 36 GRSRDAGPRKILGGVGGVGGGGSDPSKRFHVALTATDALYSQWQSRVMYYWYREMRDRPG 95
Query: 317 EQLHACHLRDLHAG 358
+ R LH+G
Sbjct: 96 SDMGG-FTRILHSG 108
>07_01_0183 +
1297445-1297796,1297896-1298424,1298548-1298630,
1298901-1298989,1299091-1299164,1300196-1300246,
1300439-1300515,1302199-1302863
Length = 639
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -2
Query: 437 PVRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAAS 294
P SS H HH+ Q Q Q Q QH + +H + P T A+
Sbjct: 25 PHMASSTMDEHHHVHHHQQQQQQQQQQQHHQQ--QQHGLFFPSVTTAA 70
>05_01_0214 - 1615519-1616775
Length = 418
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 401 HKHHYAQGQFQCHQHQHEDRVGDKHAVAL 315
H HH+ + Q H H HED G+ V L
Sbjct: 207 HDHHHHEDQEHGHVHHHEDGHGNSITVNL 235
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 401 HKHHYAQGQFQCHQHQHEDRVGDK 330
H+HH+ Q Q H HQ + R G +
Sbjct: 139 HRHHHHQRQRHHHHHQRQQRRGSR 162
>01_06_1367 -
36711738-36711774,36711962-36712686,36713217-36713284,
36714043-36714157
Length = 314
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 149 GRSRSAGPRIGGSFTIR*HRDRSVRDQLQGSAGGLYDCWR 268
GR S GSF R H + RDQL+ G + WR
Sbjct: 165 GRMESCNCSYPGSFFCRQHHTDAARDQLRCELGRAFTEWR 204
>09_04_0386 + 17190016-17190170,17190234-17190318
Length = 79
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 398 KHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEER 285
+HH QGQ CH+HQ + A +G +EER
Sbjct: 12 QHHAEQGQSPCHRHQSG---RSQPATGQTEGKGRTEER 46
>07_03_1193 -
24702135-24702421,24702835-24703160,24703240-24703910,
24704342-24704421,24704515-24704572
Length = 473
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -3
Query: 610 RTSVQPAYALITVQGVVEQHVMGRVKDRYEPGPVGPQQLN-LCSMTWNVSWSCWKVLFIQ 434
R V P+ +T + + ++ P P ++ LC++TWNV+ + + L +
Sbjct: 177 RARVVPSTVFLTADRRRKTQALSKLTTPSSSSPAPPLMMSCLCAVTWNVTCTYSQHLASK 236
Query: 433 FGIAATTPSRFTN-TITP 383
+ + S F N TI P
Sbjct: 237 YPSCCVSFSSFYNDTIVP 254
>08_01_0389 +
3437383-3437651,3438279-3438396,3438914-3439018,
3439983-3440180,3440269-3440355
Length = 258
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 261 VGGIAFVIAFFGCCGAIRESNCM 329
VG I F+ + FGC GA R C+
Sbjct: 98 VGVILFITSIFGCAGASRGGCCL 120
>06_03_0963 + 26368959-26369462,26370900-26371205
Length = 269
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 231 FRVAPVACMIVGGIAFVIAFFGCCGAIRESNCMLVTY--AIFMLVLMALKLTLGVMVFVN 404
F PV + G + ++ G GA+ ++C+L Y A+F+L+L T+ V N
Sbjct: 42 FMERPVVAL--GVLLLALSLAGLAGALCGASCLLWLYLLALFLLILALFVFTVFAFVVTN 99
>05_04_0421 + 21114569-21114664,21115042-21115223,21115376-21115640
Length = 180
Score = 27.9 bits (59), Expect = 10.0
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 219 SETSFRVAPVACMIVGGIAFVIAFFGCCGA-IRESNCMLVTYAIF--MLVLMALKLTLGV 389
SET R+ V C ++ IA VIAF A I S C +V F VL + LG+
Sbjct: 78 SETK-RIVGVVCAVISWIAAVIAFVMFLDAGIVASECFIVREGFFAGAGVLALIATALGL 136
Query: 390 MVFVNL 407
++ L
Sbjct: 137 TSYIVL 142
>05_02_0120 - 6797954-6798970,6799466-6799951
Length = 500
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -1
Query: 564 SSSSTLWAGSRIGTSPDPL 508
SSS++ WAG+R+ T+PD L
Sbjct: 305 SSSTSTWAGARLLTNPDHL 323
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -2
Query: 401 HKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASE 291
H HH++Q Q H H G + ++P A+E
Sbjct: 156 HPHHHSQPQQPQSHHHHHHHSGSRKRHSMPPAYTAAE 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,436,920
Number of Sequences: 37544
Number of extensions: 450486
Number of successful extensions: 1444
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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