Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29e02
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...   100   1e-23
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.9  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   3.3  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   4.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.7  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score =  100 bits (240), Expect = 1e-23
 Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 12/228 (5%)
 Frame = +3

Query: 87  MGCGEFLVKYVXXXXXXXXXXXXXXXXXXXXXVHLQFADIETVLSETSFRVAPVACMIVG 266
           M CG  ++KY+                     +HLQ   +   + ET      +  +++G
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQI-ETGLAFPSITLIVLG 59

Query: 267 GIAFVIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVFV------NLDGVVAAI 428
            I FVI+FFGCCGAIRES+CM +T+A F+L ++ +++ + V  F+      N   +    
Sbjct: 60  SIIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKY 119

Query: 429 PNWMNKTF--QQDQDTFHVIEHRFSCCGPTGPGSYLSLTLPITCCST---TPCTVINAYA 593
               N  F   + +D    I+    CCG      Y    +P +CC++     C++ N+Y 
Sbjct: 120 QEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCCNSPENNTCSISNSYT 179

Query: 594 -GCTEVLQALFNNYXXXXXXXXXXXXXXXXXXXXFALCLANHARNKMR 734
            GC E L+                           ALCLAN  +N  R
Sbjct: 180 NGCVEALKDTVKLAGTVFGSVAIAIAIVELIGIICALCLANSIKNAER 227


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 215  SVRDQLQGSAGGLYDCWRHRIRYCVLR 295
            S+  +L+  A GL  C  HR   CVLR
Sbjct: 1083 SLAVELEHGAAGLRLCLHHRDLPCVLR 1109



 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 701 QSEDDGHQFNGGDHDGDRAD 642
           +  DDG   N GD    RAD
Sbjct: 194 RDSDDGSDGNDGDESSCRAD 213


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 260 CWRHRIRYCVLRM-LRCHQGEQLHACHL 340
           C R  ++   LR  LR H GE+ +AC L
Sbjct: 43  CDRQFVQVANLRRHLRVHTGERPYACEL 70


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 166 WASDWRFIYNSLT*RPFCQRPASG*RR 246
           ++ D+RF + S+  + FC+R  +  RR
Sbjct: 65  FSKDFRFAFKSIICKCFCKRRTNTLRR 91


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 166 WASDWRFIYNSLT*RPFCQRPASG*RR 246
           ++ D+RF + S+  + FC+R  +  RR
Sbjct: 513 FSKDFRFAFKSIICKCFCKRRTNTLRR 539


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 396 TPLRPRSVSVPSTP 355
           TPL+PR  S+ S+P
Sbjct: 892 TPLQPRFYSISSSP 905


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,830
Number of Sequences: 438
Number of extensions: 4214
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)