Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29e01
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 48 1e-06
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 48 2e-06
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 47 3e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 44 3e-05
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 7e-05
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 40 4e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 39 7e-04
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 39 7e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 39 9e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.002
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.002
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 38 0.002
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.003
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.006
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.008
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.008
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.011
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 35 0.011
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.015
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 35 0.015
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 34 0.026
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 33 0.059
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.078
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.078
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 32 0.078
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 30 0.31
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.31
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.31
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.73
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 0.73
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 28 1.7
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 5.1
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 26 5.1
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.1
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 26 6.8
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 26 6.8
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 25 9.0
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 48.0 bits (109), Expect = 1e-06
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +1
Query: 130 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAED 294
D K+Y+ NL N + ++ ++ +G++ + + +N GF F EF++P DAE
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 295 SVRGLDGTRCCGTRIRVEMS 354
++ GLDG G ++ + +
Sbjct: 367 AISGLDGKDTYGNKLHAQFA 386
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 47.6 bits (108), Expect = 2e-06
Identities = 26/73 (35%), Positives = 38/73 (52%)
Frame = +1
Query: 142 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 321
+++VG + A++ ++ F YG I + + GF FVE ED RDA D V G
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMN---GFGFVEVEDARDARDIVNDFQGKE 61
Query: 322 CCGTRIRVEMSNG 360
G+RI VE + G
Sbjct: 62 FMGSRIVVEPARG 74
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 47.2 bits (107), Expect = 3e-06
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Frame = +1
Query: 145 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA-----RNPPGFAFVEFEDPRDAEDSVRGL 309
VYVGNL ++ +I +FSK G IR + + + P GF FVE+ + +DA DS++ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 310 DGTRCCGTRIRVEMSNG 360
T IR ++ +G
Sbjct: 94 SRTSLDERIIRADLDHG 110
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +1
Query: 136 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 300
SC VYVGN+ ++ ++ IF + G +++ + + P G+ F E+ DP A +V
Sbjct: 4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63
Query: 301 RGLDGTRCCGTRIRVE 348
R L+ R+RV+
Sbjct: 64 RNLNNYDAGTRRLRVD 79
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 42.3 bits (95), Expect = 7e-05
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +1
Query: 145 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 312
V+VGNL + ++ + F +G I +V + R +AFVEF++P DA++++ ++
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 313 GTRCCGTRIRVEMSN 357
+ C IRV +N
Sbjct: 68 YSILCDRCIRVSPAN 82
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.9 bits (89), Expect = 4e-04
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Frame = +1
Query: 145 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----------ARNPPGFAFVEFEDPRDAED 294
+YVGNL + ++ ++F +GN + +++P FAF+ FE+ A++
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 295 SVRGLDGTRCCGTRIRVEMSN 357
++ L+G+ G ++VE ++
Sbjct: 82 AIASLNGSSFQGNTLKVEYTH 102
Score = 39.9 bits (89), Expect = 4e-04
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Frame = +1
Query: 139 CKVYVGNLGTN--ASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDS 297
C ++V NL N + ++E++FSK+G I++ +A P G+ FV F P +A +
Sbjct: 419 CNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQA 478
Query: 298 VRGLDG 315
+ L+G
Sbjct: 479 INTLNG 484
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.1 bits (87), Expect = 7e-04
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 145 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 312
+YVGNL S + +F+ G++ +A P G F V+FE+ DA S+ L+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 313 GTRCCGTRIRVEMSN 357
G R G +++ ++
Sbjct: 342 GYRYGGRPLQLSYAH 356
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 142 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGF----AFVEFEDPRDAEDSVRGL 309
+VYVGNL +E+++ + GN+ N + P G A +E+ +A +++ L
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 310 DGTRCCGTRIRV 345
+ G + +
Sbjct: 127 SNQKFMGRLVYI 138
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 39.1 bits (87), Expect = 7e-04
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +1
Query: 136 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 309
S V++GNL ++ + EIE+ F K+G I ++ + + AFV F + RDA VR L
Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-SKKNIAFVHFLNIRDAIKVVRTL 354
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 136 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 309
S VY ++ + + E+E I +YG I ++ +N FV + + +A +V GL
Sbjct: 499 SRNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSS-GFVAYTNISNAMKAVNGL 555
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 38.7 bits (86), Expect = 9e-04
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Frame = +1
Query: 142 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN---------PPGFAFVEFEDPRDAED 294
+V+VG L T+ K EI +F G +R V + P G AFV F + D +
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 295 SVRGLDG 315
++ L+G
Sbjct: 105 AIETLNG 111
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Frame = +1
Query: 112 SRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 276
S ++++ S +Y+GNL + ++ +I +FS++G ++ + R+ GFAF+++ED
Sbjct: 22 SWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81
Query: 277 PRDAEDSVRGLDGTRCCGTRIRVE 348
R +V + + +RV+
Sbjct: 82 QRSTVLAVDNMTNVKLLDRLVRVD 105
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 145 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 273
+YV NL S I +FS YGN++++W+ +P A V +E
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWML-SPDNSAIVSYE 43
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +1
Query: 130 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAED 294
+L ++V + + + E+++IFSK+G + +V + R P GF F+ F +A
Sbjct: 98 NLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATS 157
Query: 295 SVRGLDGTRCCGTRIRVE 348
++ L+ G + V+
Sbjct: 158 AIDNLNSQEFYGRVLNVQ 175
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.1 bits (82), Expect = 0.003
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 142 KVYVGNLGTNASKYE-IEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRG 306
++ + NL + K + +E FSK+G +R + + G FAFV +D + AE+++
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 307 LDGTRCCGTRIRVE 348
L+GT G I V+
Sbjct: 168 LNGTEIDGRPIAVD 181
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.9 bits (79), Expect = 0.006
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 145 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-PGFAFVEFEDPRDAEDSVRGLDGTR 321
V+VG L S+ E++ +F +G I V+V P G FV+F + + AE ++ L G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYP 362
Query: 322 CCGTRIRV 345
+RIR+
Sbjct: 363 LGNSRIRL 370
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.5 bits (78), Expect = 0.008
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +1
Query: 145 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDP 279
VYVGN+ + + E++ F+ G++ V + +P GFA++EF +P
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.5 bits (78), Expect = 0.008
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = +1
Query: 136 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 300
+C V+VG L N + + F +YG I V + G+ +V+FE P A+ +V
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321
Query: 301 RGLDGTRCCGTRIRVEMSN 357
G + +++SN
Sbjct: 322 AANGTKEIDGRMVNLDLSN 340
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.1 bits (77), Expect = 0.011
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 130 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW 231
D S +YVGN+ + S EI K FSKYG + +++
Sbjct: 14 DESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.1 bits (77), Expect = 0.011
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = +1
Query: 130 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR--NPPG----FAFVEFEDPRDAE 291
+L ++YVG L ++ ++E FS++G++ N+ + P G FA++ F D
Sbjct: 2 ELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKW 61
Query: 292 DSVRG-LDGTRCCGTRIRVE 348
+ L G+++R+E
Sbjct: 62 QKCKSYLSNATFKGSKLRIE 81
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.7 bits (76), Expect = 0.015
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 142 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 306
++++ NL + ++ +++ +F +G + V + NP GFA+++F D DA +
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 307 LDGTRCCGTRIRV 345
LD G + V
Sbjct: 384 LDAKPFQGRLLHV 396
Score = 32.7 bits (71), Expect = 0.059
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Frame = +1
Query: 145 VYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNPP---------GFAFVEFEDPRDAED 294
+YV NL + + E +K+F G + V A+ P GF FVEF+D A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 295 SVRGLDGTRCCGTRIRVEMSN 357
++ ++G G ++ +++S+
Sbjct: 681 AMHAMNGFVLDGHKLEIKLSH 701
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 34.7 bits (76), Expect = 0.015
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +1
Query: 124 EWDLS-CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFED 276
EWD + +++VGNLG + + + + FS+Y ++ V R+ GF FV F+D
Sbjct: 24 EWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKD 79
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 33.9 bits (74), Expect = 0.026
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +1
Query: 145 VYVGNLGTNASKYEIEKIFS-KYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 321
+YVGNL + S+ E++ +FS + G R + + FVEFE+ A ++++ L G
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQGV- 486
Query: 322 CCGTRIR 342
C + I+
Sbjct: 487 CLSSSIK 493
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 32.7 bits (71), Expect = 0.059
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +1
Query: 145 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFED 276
V+VGNL A + + + F G+I V + R+P GFA+++F+D
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.078
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 145 VYVGNLG-TNASKYEIEKIFSKYGNIRNVWVAR--NPPGFAFVEFEDPRDAEDSVRG 306
++VG L N + Y + +FSKYG + + + P FAF+ F+ + A +V G
Sbjct: 367 IFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCG 423
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Frame = +1
Query: 112 SRYREWDLSCKVYVGNLGTNASKYE----IEKIFSKYGNIRNVWVARN--PPGFAFVEFE 273
S R ++C ++V +L ++ S+ E ++ F ++G + +V V ++ ++FV+F+
Sbjct: 71 SSVRGKPVAC-LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQ 129
Query: 274 DPRDAEDSVRGLDGTRCCGTRIRVE 348
+ DA ++ T G IR+E
Sbjct: 130 NTDDASKALSEAQNTILDGRHIRIE 154
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 32.3 bits (70), Expect = 0.078
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 85 PPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----- 249
P ++K+K + + D ++VGNL ++S ++ F + G + +V + +
Sbjct: 74 PHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQK 133
Query: 250 GFAFVEFEDPR 282
G+AFVEF +P+
Sbjct: 134 GYAFVEFINPK 144
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 32.3 bits (70), Expect = 0.078
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 253 FAFVEFEDPRDAEDSVRGLDGTR 321
FAFVE+ED RDAED+ + G R
Sbjct: 49 FAFVEYEDSRDAEDAYYEVHGRR 71
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 30.3 bits (65), Expect = 0.31
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 190 EKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 309
E+ KYG + ++ V N G FV+FE+ AE ++ GL
Sbjct: 535 EECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGL 574
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 30.3 bits (65), Expect = 0.31
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 142 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR---NPPGFAFVEFEDPRDAEDSV 300
++YV N+ ++ ++E F YG + +V + + GF +V +DAE+++
Sbjct: 758 ELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENAL 813
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 145 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVR 303
+YV N + +I K+FS YGN+ +V F +V+ P +A ++++
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQ 724
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 30.3 bits (65), Expect = 0.31
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 145 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 321
++VGNL + S + FS YG + ++ + + AF+ F+ A+ + L+G R
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS-AFLNFDSVETAKHVLEELNGKR 646
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.1 bits (62), Expect = 0.73
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +1
Query: 145 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRGL 309
++V L ++E IFS++G I + V R+ +AF+EF++ E + +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 310 DGTRCCGTRIRVEMS 354
+RI V+ S
Sbjct: 306 QNVLIDDSRIHVDFS 320
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 29.1 bits (62), Expect = 0.73
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 109 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFE 273
MS + + +Y+GNL + + ++ + G + N+ + R+ GF F EF
Sbjct: 1 MSIREDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFL 60
Query: 274 DPRDAEDSVRGLDGTRCCGTRIRVEMSN 357
+D E + + L+ + G IRV ++
Sbjct: 61 HEQDVEYACQILNQVKLFGKPIRVNRAS 88
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 145 VYVGNLGTNASKYEIEKIFSKYGNIRNVW--VARNPPGFAFVEFEDPRDAEDSVRGLDG 315
+YVGNL + ++ FSK R + + N P FVEFE+ A ++ + G
Sbjct: 604 IYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSP-MCFVEFEEVCHAAKAMEKMQG 661
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Frame = +1
Query: 94 SIKTKMSRYREWDLSCKV-YVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGF 255
+IK K+S + V YVG L + ++ FS++G + + ++RN +
Sbjct: 89 TIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHY 148
Query: 256 AFVEFE 273
AF+EFE
Sbjct: 149 AFIEFE 154
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 647 VALLLAIVYKLLHTHFHMYTLKTISLSHCSSKICTTSQYLVLLS 516
+++ + IV LL + F+ Y+L S I T S ++ LLS
Sbjct: 107 ISVYIGIVISLLVSLFYFYSLPNFPYSKTCIFIYTVSSFIELLS 150
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 101 KLRCLATENGIFLAKCT---WATWVLMRLNMK*KKYF 202
KL +AT + IF + W+TWVL R +K +F
Sbjct: 5 KLANVATVDAIFAISSSTFLWSTWVLQRTILKRPNFF 41
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 436 TLTGRESMIGGGDYDCVTCCGLSLCDHLTFRHESWCH 326
T T + GD T + LC+ LT+R E W H
Sbjct: 11 TRTEIPNQASNGDAVPNTDAYMGLCNSLTYRFEGWRH 47
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +2
Query: 518 TAKPGIEKLCRF*KNNVKDL*F*ACTCENACGVICILLLIIMQPALAVFENISLKLL 688
+ P I +C +NN + +C CEN+ G+ ++ P + + S +LL
Sbjct: 168 STNPFIYGMCYIIRNNANRILLESCYCENSTGMSTCPRILEFMPYEPLLKYNSYRLL 224
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 181 YEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAE 291
Y+I K F +YG +++V V + AFV F+ AE
Sbjct: 226 YKIRKHFEQYGPLKSV-VCSHRAKCAFVNFKTRSSAE 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,123
Number of Sequences: 5004
Number of extensions: 53512
Number of successful extensions: 184
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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