Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d24
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    33   0.030
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    30   0.21 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    29   0.36 
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    29   0.36 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   0.48 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   1.5  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    27   1.9  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   7.8  

>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 32.7 bits (71), Expect = 0.030
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 421 RSLPGQRSQVRDAAVQGLLLLVRSDRLGHV 332
           + LP  R  +RDA+ Q LL+L +SD L +V
Sbjct: 99  KCLPSPRQSIRDASHQALLILAKSDALDYV 128


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 29.9 bits (64), Expect = 0.21
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +2

Query: 44  KEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKEN 187
           K  E  E EWN+ +N+     E+A+E E T     Q Q+LL +  +EN
Sbjct: 85  KNKELIEEEWNDFQNEIGIIEENAVEQEIT----LQQQQLLAEKDEEN 128


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
 Frame = +2

Query: 41  DKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQ-GQELLIQAKKENVLLQLEAAYR 217
           +K+ +  E +  E + Q  K  E  ++ ++ E  R +  +E  ++ ++E  +L+ E   R
Sbjct: 651 EKKQQELERQKREEK-QKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILE-ERKRR 708

Query: 218 ERLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTK 343
           E+L     E +RR   + E    ERRL +  +  +   N TK
Sbjct: 709 EKLDKEEEERRRRELLEKESEEKERRLREAKIAAFFAPNQTK 750


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
 Frame = +2

Query: 32   AWLDKEVEATENEWNEGRNQTVKALEDAIEG-----EKTEQWRAQGQEL--LIQAKKENV 190
            A LD E+E  + +  E RN+T  ++E A E      EK +Q +     L  L+QA +E +
Sbjct: 913  AELDNEIERLQMQIAEWRNRTGVSVEQAAEDYLNAKEKHDQAKVLVARLTQLLQALEETL 972

Query: 191  LLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKA 346
              + E   + R +      K   +  L + N   +L  KH  +++   V  A
Sbjct: 973  RRRNEMWTKFRKLITL-RTKELFELYLSQRNFTGKLVIKHQEEFLEPRVYPA 1023


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 298 RPEAHGRLDSEQRDQGDHSGPGE-AGPGPLHRGPG 399
           RP+ H   D E R+   H  PGE   P P+H  PG
Sbjct: 184 RPKHH-EFDDEDREFPAHHEPGEHMPPPPMHHKPG 217


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 86  NQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 205
           N  + + ED++  E+ E+   Q + L +Q + ENV ++LE
Sbjct: 785 NTAILSFEDSLRRERDEKSTLQQKCLNLQYEYENVRIELE 824


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 50  VEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQ 172
           V+ T +  +E   QTV+ L  +IEG     W A  ++L+ +
Sbjct: 150 VDHTHDPSDESIKQTVQRLRSSIEGLDEAFWEAPQRQLICE 190


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 305 KHMVDWI-VSNVTKAITP-DQEKQALDRCIADLASLA 409
           ++ + W+ + N T AI+  + +   +DRC+  LASLA
Sbjct: 433 RNSICWLWIKNPTHAISRVEAQGVCVDRCLFQLASLA 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.139    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,649,343
Number of Sequences: 5004
Number of extensions: 26327
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)