Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d24
         (479 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    36   5e-04
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    33   0.007
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    27   0.33 
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    25   1.8  
DQ974163-1|ABJ52803.1|  595|Anopheles gambiae serpin 4B protein.       23   4.1  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            22   9.5  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 36.3 bits (80), Expect = 5e-04
 Identities = 31/108 (28%), Positives = 37/108 (34%), Gaps = 5/108 (4%)
 Frame = +1

Query: 121 GREDGAVARAGTGAPHP--GQEGERAPAARGRLQGEAHVRLLRG-EAASGLPAREVERGA 291
           G   G   R G   P    G EG + P       GE   R   G +   G+P R    G 
Sbjct: 401 GAPGGGEGRPGAPGPKGPRGYEGPQGPKGMDGFDGEKGERGQMGPKGGQGVPGRPGPEGM 460

Query: 292 PSRPEAHGRLDSEQRD--QGDHSGPGEAGPGPLHRGPGFAGQEVNGSE 429
           P      G   S      QG    PG+ GP  L   PG  G  + G +
Sbjct: 461 PGDKGDKGESGSVGMPGPQGPRGYPGQPGPEGLRGEPGQPGYGIPGQK 508



 Score = 32.3 bits (70), Expect = 0.009
 Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
 Frame = +1

Query: 157 GAPH-PGQEGERAPAARGRLQGEAHVRLLRGEAAS-------GLPAREVERGAPSRPEAH 312
           GAP  PG++GE+    R  L G    R L+GE          G+   + ERG    P   
Sbjct: 544 GAPGLPGRDGEKGEPGRPGLPGAKGERGLKGELGGRCTDCRPGMKGDKGERGYAGEPGRP 603

Query: 313 GRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAGQ 411
           G       ++G    PGE G   L   PG  G+
Sbjct: 604 G-ASGVPGERGYPGMPGEDGTPGLRGEPGPKGE 635



 Score = 30.7 bits (66), Expect = 0.027
 Identities = 23/68 (33%), Positives = 31/68 (45%)
 Frame = +1

Query: 169 PGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGD 348
           PGQ+G    A    L+G+   R  +G   +   A+E   GAP  P   GR D E+ + G 
Sbjct: 505 PGQKGNAGMAGFPGLKGQKGERGFKGVMGTPGDAKEGRPGAPGLP---GR-DGEKGEPGR 560

Query: 349 HSGPGEAG 372
              PG  G
Sbjct: 561 PGLPGAKG 568



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
 Frame = +1

Query: 106 GGRNRGREDGAVARAGTGAPHPGQ--EGERAPAARGRLQGEAHVRLLRGEAAS-GLPARE 276
           G R      G     G  A HP    +G++       L+G    +   GE    G P R 
Sbjct: 199 GPRGYAGIPGTKGEKGEPARHPENYNKGQKGEPGNDGLEGLPGPQ---GEVGPRGFPGRP 255

Query: 277 VERGAPSRPEAHG-RLDSEQRDQGDHSGPGEAG 372
            E+G P  P   G R D     +G+    G  G
Sbjct: 256 GEKGVPGTPGVRGERGDKGVCIKGEKGQKGAKG 288


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 32.7 bits (71), Expect = 0.007
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
 Frame = +1

Query: 130 DGAVARAGTGAPHPGQEGERA----PAARGR--LQGEAHVRLLRGEAASGLPAREVERGA 291
           DG    AG   P  G +GE+     P   G   L GE     L G    GL  R+ +RG 
Sbjct: 405 DGLPGAAGPVGPR-GYDGEKGFKGEPGRIGERGLMGEKGDMGLTGPV--GLSGRKGDRGV 461

Query: 292 PSRPEAHGRLDSEQRDQGDHSGPGEAG-PGPLHRGPGFAGQ 411
           P  P     + + + D+G+   PG  G PG +   PG +G+
Sbjct: 462 PGSPGLPATVAAIKGDKGEPGFPGAIGRPGKV-GVPGLSGE 501



 Score = 29.5 bits (63), Expect = 0.063
 Identities = 23/80 (28%), Positives = 33/80 (41%)
 Frame = +1

Query: 172 GQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGDH 351
           G++G+R       L G    +  +GE     P R   +G P  P  +G        +GD 
Sbjct: 681 GEKGDRGLPGMSGLNGAPGEKGQKGETPQLPPQR---KGPPGPPGFNG-------PKGDK 730

Query: 352 SGPGEAGPGPLHRGPGFAGQ 411
             PG AGP  +   PG  G+
Sbjct: 731 GLPGLAGPAGIPGAPGAPGE 750



 Score = 27.5 bits (58), Expect = 0.25
 Identities = 29/96 (30%), Positives = 36/96 (37%)
 Frame = +1

Query: 88  PNRESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLP 267
           P R    GR+ G       +   G P     G   P+     QGE   R   G+  SGL 
Sbjct: 552 PGRPGKTGRD-GPPGLTGEKGEPGLPVWKDRGPSGPSGPLGPQGEKGDR---GD--SGLM 605

Query: 268 AREVERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGP 375
            R    G P  P+    L   Q ++GD   PG  GP
Sbjct: 606 GRPGNDGLPG-PQGQRGLPGPQGEKGDQGPPGFIGP 640



 Score = 25.8 bits (54), Expect = 0.77
 Identities = 20/64 (31%), Positives = 23/64 (35%)
 Frame = +1

Query: 172 GQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGDH 351
           G  G   PA    L G        GE     P  + E+G P RP   GR D      G+ 
Sbjct: 512 GLPGLPGPAGLNGLPGMKGDMGPLGEKGDACPVVKGEKGLPGRPGKTGR-DGPPGLTGEK 570

Query: 352 SGPG 363
             PG
Sbjct: 571 GEPG 574


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +2

Query: 194 LQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQA 373
           LQ  A   +  M+  S+  +R   +L     ++ + QK  V   +SN+ +A   + ++Q 
Sbjct: 304 LQASAGVTKVSMWQLSDGTKRARVRLPAKAAKQLVGQKLTVSCCISNIKEAPAINLQQQR 363

Query: 374 LDRCI 388
             RC+
Sbjct: 364 CYRCL 368


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 20/49 (40%), Positives = 21/49 (42%)
 Frame = +1

Query: 151  GTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPS 297
            G G    G  G  AP A G + G A V        SGLPA     GAPS
Sbjct: 3200 GAGLAMVGAGGSTAPGAGG-VPGVAVV------PGSGLPAAAASGGAPS 3241


>DQ974163-1|ABJ52803.1|  595|Anopheles gambiae serpin 4B protein.
          Length = 595

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 194 LQLEAAYRERLMYAYSEVKRRLDYQLEKSNVER 292
           + L   YR + M  YS   + LD++L+ S   R
Sbjct: 170 IPLSDTYRNQSMTYYSSEVQSLDFELDTSGSTR 202


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/54 (16%), Positives = 31/54 (57%)
 Frame = +2

Query: 164 LIQAKKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWI 325
           L++ K +  L ++E +    + + YSE  + +++++  +  E+ ++ ++  +W+
Sbjct: 594 LVEGKGDR-LARIELSSGSSVSFKYSEQNKLVNFKVNTTCYEQNVSFEYEGNWL 646


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.315    0.139    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 427,620
Number of Sequences: 2352
Number of extensions: 7342
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 41863041
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)