Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d24
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   2.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   2.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   2.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   3.9  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.9  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 451 TLLYINNVRFRSLPGQRSQVRDAAVQGLL 365
           +L Y+N  +FR+   Q++ +    VQ +L
Sbjct: 274 SLYYVNTEQFRTSDYQQNDIHYEGVQNIL 302


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 451 TLLYINNVRFRSLPGQRSQVRDAAVQGLL 365
           +L Y+N  +FR+   Q++ +    VQ +L
Sbjct: 274 SLYYVNTEQFRTSDYQQNDIHYEGVQNIL 302


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 451 TLLYINNVRFRSLPGQRSQVRDAAVQGLL 365
           +L Y+N  +FR+   Q++ +    VQ +L
Sbjct: 274 SLYYVNTEQFRTSDYQQNDIHYEGVQNIL 302


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 379 VQGLLLLVRSDRLGHVAHYPVDHVLLGETALHVRLLEL 266
           ++  LL   +DRLG +   P +       ++H++L +L
Sbjct: 252 IEKRLLFSHNDRLGFLTFCPTNLGTTVRASVHIKLPKL 289



 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 417 HFLASEARSAMQRSRACFSW 358
           HFL  E    +Q + AC  W
Sbjct: 184 HFLFKEGDRFLQAANACRFW 203


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +1

Query: 115 NRGREDGAVARAGTGAPHPGQEGERAPAAR 204
           N  ++  + +  G+   H G     +PAAR
Sbjct: 54  NYAQQHNSPSPTGSSPQHSGSSASTSPAAR 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.139    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,054
Number of Sequences: 438
Number of extensions: 2040
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)