Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d23
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    29   0.68 
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    27   2.1  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    27   3.6  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   4.8  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   8.4  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   8.4  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 325 DSLRLVVEGRDIRVEEAAARLSLEDG 248
           +SLR +V+G  IR ++  A L +EDG
Sbjct: 74  NSLRFLVDGERIRPDQTPAELDMEDG 99


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 86  GGWVSVFHSTVGIVTCV 136
           G W S+ HSTV ++TC+
Sbjct: 104 GTWFSIGHSTVVLITCI 120


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 67  VIKPNNRRMGLCFSFDCGDCDLCVNPCCLALSAC 168
           VI PNN R+G+  +  C   D+    C ++   C
Sbjct: 221 VIHPNNARLGILHTLGCVPVDVMPIDCQVSCMEC 254


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = -2

Query: 193 SDTDTESDNKRSMLNSRGLHTGHNPHSRMKNRDPSS 86
           S+  + +++K + LN  G++ G NP+SR+  ++PSS
Sbjct: 106 SEESSSTESKFATLND-GINGG-NPYSRLYRKNPSS 139


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 526 PSPNQPAVIINQPPPPYR*IYTEYVISFL 612
           PSPN P+   NQ  P Y   + ++++S +
Sbjct: 171 PSPNTPSGNANQLTPAYAASFDKFMVSLI 199


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -3

Query: 201  TGVRTQTRNQTTSAQC*TAGVYTQVTIPT 115
            T   T T  QTT+    TAG  TQVT  T
Sbjct: 1362 TQATTATEVQTTTGATGTAGTETQVTTAT 1390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,417
Number of Sequences: 5004
Number of extensions: 55344
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)