Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d20
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    30   0.38 
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    27   2.1  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.1  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   4.7  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.3  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    26   6.3  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    25   8.3  

>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -1

Query: 320 ELFQVDAIEASGAIEAMGTSSNVIGQSNQQPGIVDIG-EHGQVTKDEATNPQWKAVTAFF 144
           EL +  A  A   + + G  S+ +   ++ PG+VD+G E+ +V  DEAT  +  A  AF 
Sbjct: 377 ELLERSADTADADVPS-GLYSHALVNLHEHPGLVDLGSENIRVPIDEATALKSFAKAAFL 435

Query: 143 AQTRSRR*RVVGYWFGHF 90
             + ++      Y FG +
Sbjct: 436 GHSSAQLRMGAVYEFGKY 453


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 52  NCLCEFKTFQILIK*PNQYPTTRYRRL 132
           NCL EF T Q+ ++  NQ     YRRL
Sbjct: 187 NCLMEFPTPQMELRINNQVAHANYRRL 213


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 26/85 (30%), Positives = 35/85 (41%)
 Frame = +3

Query: 114 NTLSSTSSLGKKCCYCFPLRIGCFILGYLTMFTNVYNTGLLITLTNYIGAGSHSFDRTTS 293
           +TL++T      C    P   G  + G   ++ +VY TG  +  T      S S   TTS
Sbjct: 83  STLTATEVSSSLCTTPCP-GYGSLMCGG-DLYWSVYLTGNGVLQTT---VSSSSVSSTTS 137

Query: 294 FDSIDLEELSEPTTTLQPAQQSSES 368
             S      S  TTT  P+  SS S
Sbjct: 138 SSSSSSPSSSSTTTTTSPSSSSSSS 162


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 539 SVPDNDHHDSGLNVTWLGHCCSILLHHG-VQYL 634
           S+P +   +  L  +WL H  ++L +HG ++YL
Sbjct: 386 SLPLDQEKELSLRKSWLSHFSNLLFNHGQLKYL 418


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 105 IPYNTLSSTSSLGKKCCYCFPLRIGCFILGYLTMFTNVYNTGLLITLTNYIGAGSHSFD 281
           I +  + S  ++ KK C    LR    ILG+L ++   + +   I L   I  G H F+
Sbjct: 185 ISFINIRSWRTIPKKWCVLQVLRYFHRILGHLWLYVGFFESCTGIVLLAGIFKGQHIFN 243


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 11  QPVTRQPFATPNVITVCANSKHS 79
           Q +T QP A  N+I+V A S HS
Sbjct: 269 QGLTPQPLALKNIISVGAGSYHS 291


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 33/135 (24%), Positives = 54/135 (40%)
 Frame = +3

Query: 60  VRIQNIPNFDKMTKPIPYNTLSSTSSLGKKCCYCFPLRIGCFILGYLTMFTNVYNTGLLI 239
           V I  +P F  ++  IP  +L+     GK+      L I   +LG +    +++  GL +
Sbjct: 250 VYILIMPAFGVVSHIIP--SLAHKPIFGKEGMLWAMLSIA--LLGLMVWSHHLFTVGLDV 305

Query: 240 TLTNYIGAGSHSFDRTTSFDSIDLEELSEPTTTLQPAQQSSESPLLSGVGFVLLMTIVIN 419
               Y  A +      T      ++  S   T    A Q S  P+L  +GF++L TI   
Sbjct: 306 DTRAYFSAATMVIAIPTG-----IKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGL 360

Query: 420 AAWLLVNIACVVGLH 464
              +L N    +  H
Sbjct: 361 TGVILSNSVLDIAFH 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,353
Number of Sequences: 5004
Number of extensions: 56270
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)