Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d16
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical pr...   130   7e-31
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    31   1.1  
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    30   1.4  
Z81491-7|CAI46570.1|  184|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U29535-5|AAY55856.1|  159|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical
           protein W09C5.8 protein.
          Length = 175

 Score =  130 bits (315), Expect = 7e-31
 Identities = 64/147 (43%), Positives = 88/147 (59%)
 Frame = +3

Query: 171 KIGDREWVGYGFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEKGDWRKLTLEEKKTL 350
           K   RE VGYG NG   Y DR D+  PAIRFR++   I  +R KE+ DW+ L+ EEKK L
Sbjct: 29  KAAGRELVGYGANGDNIYQDRLDYWYPAIRFRKEDSVIAPIRAKEQADWKNLSAEEKKLL 88

Query: 351 YRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIYMAMKVFVYSPIPDSLSEERQKAQ 530
           YR SF QT +EF+APTG WK +    L +  L  +  + + V VY  +P +   E ++AQ
Sbjct: 89  YRYSFRQTLSEFEAPTGYWKVISAVILSVLGLCTYYAVLLNVCVYPELPPTFQNEYKEAQ 148

Query: 531 LQRMLDLKVNPIDGLASKWDYENNRWK 611
           ++R L L+     G  + +DYEN +WK
Sbjct: 149 VERALVLEKGQFLGAPTHYDYENKKWK 175


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 94  CAGRSSMLSVFLSAPGLDPLETLNLPRLVTVSG*AMVSTASPTT*TGLTSPC-LPSGSVR 270
           C GR+   SV   +P + PL     P +VTV+      + +P    G T P   P GSV 
Sbjct: 182 CVGRNITYSVVTDSPVVPPLVVTGTPSIVTVT--PPSPSVTPGGRPGSTPPATFPPGSVS 239

Query: 271 T 273
           T
Sbjct: 240 T 240


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 94  CAGRSSMLSVFLSAPGLDPLETLNLPRLVTVSG*AMVSTASPTT*TGLTSPC-LPSGSVR 270
           C GR+   SV   +P + PL     P +VTV+      + +P    G T P   P GS+ 
Sbjct: 105 CVGRNITYSVVTDSPVVPPLVVTGTPSIVTVT--PPSPSVTPGGRPGSTPPATFPPGSIS 162

Query: 271 T 273
           T
Sbjct: 163 T 163


>Z81491-7|CAI46570.1|  184|Caenorhabditis elegans Hypothetical
           protein D1086.11 protein.
          Length = 184

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +3

Query: 429 LVLSSLAAWIYMAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASKW---DYEN 599
           ++   L   + ++  V+  SP+  S  EE QK      LD++ NP D    KW   DY++
Sbjct: 1   MIWQVLITLVVLSATVYSESPLTPSKIEECQKT-CGVPLDIRTNPDDTKCKKWNNCDYDD 59

Query: 600 NR 605
            +
Sbjct: 60  RK 61


>U29535-5|AAY55856.1|  159|Caenorhabditis elegans Hypothetical
           protein C25H3.15 protein.
          Length = 159

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +2

Query: 8   KLSNFASVGECDFRTIQVQSFQQNGQLSDAPGAHQCYPCSCLRQGWIHWKH*TCQD 175
           KL  + ++G C+  +++ Q  ++    S +   H  Y     RQ W+ W++ TC D
Sbjct: 73  KLKTYCALG-CE-ESLEAQLVKKIPSNSPSCVQHYTYNLERRRQDWLLWRNGTCLD 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,856,188
Number of Sequences: 27780
Number of extensions: 412252
Number of successful extensions: 1163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)