Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d15
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0099 + 20070925-20073867                                         32   0.63 
02_04_0475 + 23229046-23229480,23230062-23231205,23232187-232323...    30   2.5  
02_03_0144 + 15694766-15694883,15694980-15697612                       29   3.3  
11_04_0278 + 15711441-15711714,15712272-15712307,15713078-15713283     28   7.7  
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842...    28   7.7  
03_01_0578 + 4270835-4271482,4271763-4272140,4272353-4272444,427...    28   7.7  

>11_06_0099 + 20070925-20073867
          Length = 980

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 13/62 (20%), Positives = 33/62 (53%)
 Frame = +3

Query: 396 LETLAHLHAVSMTLRIKKPDEFKRIADLIPEAYYTEKNRDWYSKFQHKAVMIDQAILIEH 575
           L  L+HL   S ++    P     +  ++P+ YYT ++ +  S   +K+++  + + +E+
Sbjct: 697 LGNLSHLDLASNSISGPLPQYLANLTGMVPKQYYTNEHEERLSGCDYKSLVTMKGLELEY 756

Query: 576 ED 581
           ++
Sbjct: 757 DE 758


>02_04_0475 +
           23229046-23229480,23230062-23231205,23232187-23232334,
           23232776-23234225
          Length = 1058

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 231 LQQSLGASECIQN--SVPICYGCYLDGVNDYIVLEDLGESRCKSL 359
           + Q  G S+C+ +  S+  C    LDG +  I+L+DL E+ C  L
Sbjct: 281 ISQIKGQSDCLDDLQSISNCLEEILDGKSCLIILDDLWENSCFQL 325


>02_03_0144 + 15694766-15694883,15694980-15697612
          Length = 916

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 204 SDVLPILVDLQQSLGASECIQNSVPICYGCYLDG--VNDYIVLEDLGESRCKSLTKHPTK 377
           +D  P+L+D  +++G SE         Y C  DG   +D   +   GE    +++ H  K
Sbjct: 157 ADSSPMLIDKVENIGTSENTDLGKGYSYDCVSDGNAGSDVAAVHIAGEEP-GAISNHSMK 215

Query: 378 CERDSVLETL 407
            E DSV + +
Sbjct: 216 GEVDSVTDQI 225


>11_04_0278 + 15711441-15711714,15712272-15712307,15713078-15713283
          Length = 171

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 195 LFYSDVLPILVDLQQSLGASECIQNSVP 278
           L YSD+L +LVD  Q   +S  +QN  P
Sbjct: 138 LEYSDILSLLVDTFQERNSSAYVQNESP 165


>05_03_0104 -
           8426374-8426542,8426656-8426828,8427020-8427103,
           8427110-8427205,8427530-8427616,8428639-8428767,
           8428922-8429098,8429185-8429295,8429642-8429761,
           8430767-8432427,8432485-8432867,8433707-8434470,
           8434532-8434813,8436158-8436493
          Length = 1523

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 555 QAILIEHEDP--SSVYYKKYNELLGQDVYGCLIEMTTTRGDFTVINHGDSWTPNFLRSKG 728
           Q +L+ H+D   +++  K    L+    +G L   T       VIN  +S TPN L  + 
Sbjct: 701 QRVLV-HKDGQLANITLKNVRSLIASQCFGSLCLHTPVLRVLDVINCAESETPNVLEDRD 759

Query: 729 RTV 737
           +T+
Sbjct: 760 KTM 762


>03_01_0578 +
           4270835-4271482,4271763-4272140,4272353-4272444,
           4272637-4273240
          Length = 573

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 84  IKVTGKRYSTSFIGKGFVDNERI-KNSLNCAELFRREALFYSDVLPILVDLQQSLGASEC 260
           IKV+   +ST ++     DNE I  N L   +    E +  S  +P+LV ++   G + C
Sbjct: 53  IKVSDSSHST-YVSLSKEDNELILSNKLQLGQFIYVEKVQSSIPVPVLVGVRPVPGRNPC 111

Query: 261 IQN 269
           I N
Sbjct: 112 IGN 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,183,092
Number of Sequences: 37544
Number of extensions: 367832
Number of successful extensions: 932
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)