Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d15
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81142-10|CAB03503.2|  384|Caenorhabditis elegans Hypothetical p...    38   0.009
Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical pr...    38   0.011
Z92827-1|CAB07326.1|  394|Caenorhabditis elegans Hypothetical pr...    35   0.080
AF000266-9|AAC71169.1|  566|Caenorhabditis elegans Hypothetical ...    32   0.56 
AF067943-8|AAO12414.1|  428|Caenorhabditis elegans Hypothetical ...    31   0.99 
Z74038-6|CAA98496.1|  423|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z68227-15|CAJ80810.1|  414|Caenorhabditis elegans Hypothetical p...    29   4.0  
Z68227-14|CAJ80809.1|  448|Caenorhabditis elegans Hypothetical p...    29   4.0  
Z68227-13|CAA92511.1|  444|Caenorhabditis elegans Hypothetical p...    29   4.0  
U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan...    29   4.0  
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella...    29   4.0  
AF000191-2|AAB52883.2|  341|Caenorhabditis elegans Hypothetical ...    29   4.0  
U53153-6|AAT81184.1|  638|Caenorhabditis elegans Germinal center...    29   5.3  
U53153-5|AAK77641.1|  651|Caenorhabditis elegans Germinal center...    29   5.3  
U53153-4|AAK77642.2|  650|Caenorhabditis elegans Germinal center...    29   5.3  
U53153-3|AAC69038.1|  653|Caenorhabditis elegans Germinal center...    29   5.3  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   5.3  
Z66498-5|CAA91294.2|  513|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z54327-14|CAA91124.2|  513|Caenorhabditis elegans Hypothetical p...    28   7.0  

>Z81142-10|CAB03503.2|  384|Caenorhabditis elegans Hypothetical
           protein ZK1037.4 protein.
          Length = 384

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 675 TVINHGDSWTPNFLRSKGRTVA--IDFQMIRCASPVTDLMLFLFMCTNV 815
           +VI HGD W P  L  K   +A  +D+Q     SP+ DL   L  CT+V
Sbjct: 240 SVICHGDLWAPQILWDKEDNIAGIVDWQATHRGSPMEDLHHILSTCTSV 288


>Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical
           protein C29F7.2 protein.
          Length = 394

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 675 TVINHGDSWTPNFLRSKGRTVA--IDFQMIRCASPVTDLMLFLFMCTNV 815
           +V+ HGD W P  L  K   +A  ID+Q+    SP+ D    +  CT+V
Sbjct: 250 SVLTHGDLWAPQILWDKNDDIAGIIDWQITHRGSPMEDFHHIMSTCTSV 298


>Z92827-1|CAB07326.1|  394|Caenorhabditis elegans Hypothetical
           protein C29F7.1 protein.
          Length = 394

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 675 TVINHGDSWTPNFLRSKGRTVA--IDFQMIRCASPVTDLMLFLFMCTNV 815
           +V+ HGD W+P  L  K   +A  ID+Q+    SP+ DL   L   T+V
Sbjct: 250 SVLTHGDLWSPQILWDKDDNIAGIIDWQVGHQGSPMEDLHRILSTGTSV 298


>AF000266-9|AAC71169.1|  566|Caenorhabditis elegans Hypothetical
           protein W08F4.2 protein.
          Length = 566

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
 Frame = +3

Query: 6   SDEDIENIELTKAAPNGEGLLS-----AVYRIKVTGKRYSTSFIGKGFVDNERIKNSLNC 170
           S +DIEN +L K  P  E L+      ++  +  T KR   + IGK  +DN  +   LNC
Sbjct: 383 SCKDIENYQLFKMFPCLENLVVLDGPISIPNLTQTFKRLQLT-IGKVTLDNLFM---LNC 438

Query: 171 AELFRREALFYSDVLPILVDLQQSLGASECIQNSVPICY 287
           ++LF     F + VL I V  +Q +G S     S+ I +
Sbjct: 439 SQLFVNYRTFSNKVLNIFV--RQWVGGSNPSLKSITISF 475


>AF067943-8|AAO12414.1|  428|Caenorhabditis elegans Hypothetical
           protein F59B1.10 protein.
          Length = 428

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +3

Query: 678 VINHGDSWTPNFLRSKGR-----TVAIDFQMIRCASPVTDLMLFL 797
           V+ HGD W  NFL ++       T  +D+QM    +P  DL+  L
Sbjct: 277 VLCHGDLWAANFLWTENNGVFCATRIVDYQMSHLGNPAEDLVRLL 321


>Z74038-6|CAA98496.1|  423|Caenorhabditis elegans Hypothetical
           protein F58B4.5 protein.
          Length = 423

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = +3

Query: 678 VINHGDSWTPNFLRSK-GRTVA----IDFQMIRCASPVTDLMLFLFMC 806
           V+ H D W+ NFL ++ G  V     IDFQ +   +P  D+      C
Sbjct: 271 VLTHSDLWSSNFLCTRDGEKVTLKAIIDFQTVSITTPAQDVGRLFASC 318


>Z68227-15|CAJ80810.1|  414|Caenorhabditis elegans Hypothetical
           protein F49C12.7c protein.
          Length = 414

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 678 VINHGDSWTPNFL-RSKGRTVA-IDFQMIRCASPVTDLMLFLFMC 806
           V  HGD W+ N +   +G     IDFQMI      TDL   +  C
Sbjct: 268 VFVHGDLWSANIMWNQEGHLKKLIDFQMIHFGLAATDLARVMNTC 312


>Z68227-14|CAJ80809.1|  448|Caenorhabditis elegans Hypothetical
           protein F49C12.7b protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 678 VINHGDSWTPNFL-RSKGRTVA-IDFQMIRCASPVTDLMLFLFMC 806
           V  HGD W+ N +   +G     IDFQMI      TDL   +  C
Sbjct: 298 VFVHGDLWSANIMWNQEGHLKKLIDFQMIHFGLAATDLARVMNTC 342


>Z68227-13|CAA92511.1|  444|Caenorhabditis elegans Hypothetical
           protein F49C12.7a protein.
          Length = 444

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 678 VINHGDSWTPNFL-RSKGRTVA-IDFQMIRCASPVTDLMLFLFMC 806
           V  HGD W+ N +   +G     IDFQMI      TDL   +  C
Sbjct: 298 VFVHGDLWSANIMWNQEGHLKKLIDFQMIHFGLAATDLARVMNTC 342


>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
            abnormal protein1 protein.
          Length = 1732

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/83 (25%), Positives = 34/83 (40%)
 Frame = +3

Query: 309  NDYIVLEDLGESRCKSLTKHPTKCERDSVLETLAHLHAVSMTLRIKKPDEFKRIADLIPE 488
            ND+   E + +  C+SL       +    +E   HL A +  LR  KPD   R    I  
Sbjct: 1172 NDWADAERVAKDHCESLLPDVYTGQARRAIEEGDHLRAETFLLRANKPDIILRY--FIEN 1229

Query: 489  AYYTEKNRDWYSKFQHKAVMIDQ 557
              + +  R   +   H+A +I +
Sbjct: 1230 EMWPDALRIAQNYLPHQAALIQE 1252


>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
            transport protein protein.
          Length = 1737

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/83 (25%), Positives = 34/83 (40%)
 Frame = +3

Query: 309  NDYIVLEDLGESRCKSLTKHPTKCERDSVLETLAHLHAVSMTLRIKKPDEFKRIADLIPE 488
            ND+   E + +  C+SL       +    +E   HL A +  LR  KPD   R    I  
Sbjct: 1177 NDWADAERVAKDHCESLLPDVYTGQARRAIEEGDHLRAETFLLRANKPDIILRY--FIEN 1234

Query: 489  AYYTEKNRDWYSKFQHKAVMIDQ 557
              + +  R   +   H+A +I +
Sbjct: 1235 EMWPDALRIAQNYLPHQAALIQE 1257


>AF000191-2|AAB52883.2|  341|Caenorhabditis elegans Hypothetical
           protein T23C6.4 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +3

Query: 471 ADLIPEAYYTEKNRDWYSKFQHKAVMIDQAILIEHEDPSSVYYK-KYNELLGQDVYGCLI 647
           A L+   +   KN D+    + K  M D AI+   E         KYN LL +D Y   I
Sbjct: 27  AALMESQFKNMKNEDFVYPAKKKVGMDDGAIIRGEEHLRRQQESAKYNNLLTRDPYLDYI 86

Query: 648 EMTTTRGDFT 677
             T T  DFT
Sbjct: 87  LSTMTDEDFT 96


>U53153-6|AAT81184.1|  638|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform d protein.
          Length = 638

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 228 DLQQSLGA-SECIQNSVPICYGCYLDGVNDYIVLEDLGESRCKSLTK 365
           D+QQ +   S+C    V   +G +L G   +I++E LG      LTK
Sbjct: 61  DIQQEIQVLSQCDSQYVTKYFGSFLKGSKLWIIMEYLGGGSALDLTK 107


>U53153-5|AAK77641.1|  651|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform b protein.
          Length = 651

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 228 DLQQSLGA-SECIQNSVPICYGCYLDGVNDYIVLEDLGESRCKSLTK 365
           D+QQ +   S+C    V   +G +L G   +I++E LG      LTK
Sbjct: 74  DIQQEIQVLSQCDSQYVTKYFGSFLKGSKLWIIMEYLGGGSALDLTK 120


>U53153-4|AAK77642.2|  650|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform c protein.
          Length = 650

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 228 DLQQSLGA-SECIQNSVPICYGCYLDGVNDYIVLEDLGESRCKSLTK 365
           D+QQ +   S+C    V   +G +L G   +I++E LG      LTK
Sbjct: 74  DIQQEIQVLSQCDSQYVTKYFGSFLKGSKLWIIMEYLGGGSALDLTK 120


>U53153-3|AAC69038.1|  653|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform a protein.
          Length = 653

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 228 DLQQSLGA-SECIQNSVPICYGCYLDGVNDYIVLEDLGESRCKSLTK 365
           D+QQ +   S+C    V   +G +L G   +I++E LG      LTK
Sbjct: 76  DIQQEIQVLSQCDSQYVTKYFGSFLKGSKLWIIMEYLGGGSALDLTK 122


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -1

Query: 564  KSLDLSLQLCVEISNTNHDFFQ-YSTLLELNRQSF*IHRAS*FAKSSILRANVLVSLELN 388
            KS  + L+ C  I +  + F + Y TL E NRQ F +HR S F  S  +   +L+   ++
Sbjct: 2229 KSSVIFLEECYFIVSQIYLFSKLYLTLNESNRQLFRVHRFSTFCFSQFIFFIILIKFRIS 2288


>Z66498-5|CAA91294.2|  513|Caenorhabditis elegans Hypothetical
           protein C26D10.6a protein.
          Length = 513

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 387 DSVLETLAHLHAVSMTLRIKKPDEFKRIADLIPEAYYTEKNRDWYS 524
           D+  + L H+ A + TL  ++        +  PE  Y EK+R+W S
Sbjct: 222 DAGCQELTHIGAAATTLHFRQDSPVYSGCEF-PETLYREKSRNWES 266


>Z54327-14|CAA91124.2|  513|Caenorhabditis elegans Hypothetical
           protein C26D10.6a protein.
          Length = 513

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 387 DSVLETLAHLHAVSMTLRIKKPDEFKRIADLIPEAYYTEKNRDWYS 524
           D+  + L H+ A + TL  ++        +  PE  Y EK+R+W S
Sbjct: 222 DAGCQELTHIGAAATTLHFRQDSPVYSGCEF-PETLYREKSRNWES 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,485,507
Number of Sequences: 27780
Number of extensions: 358961
Number of successful extensions: 971
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)