Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d15
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.4  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   4.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 396 ELNPVRTL*GVSLKIYSDFRQDLLERYNH 310
           ELN +RT  G S K+ +D   +  E Y H
Sbjct: 56  ELNALRTELGASTKLATDTTSENEENYPH 84


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 342 SRCKSLTKHPTKCERDSVLETLAHLHA 422
           ++C +L + P+KC + SV  +    H+
Sbjct: 353 TKCNTLERTPSKCSQTSVHYSNGQTHS 379


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 802 INKKSIRSVTGEAHRII*KSIATVLPL 722
           +N + IRS+ G    I+ K++  V+P+
Sbjct: 207 LNNEIIRSIQGTGTIILKKTVCFVIPI 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,868
Number of Sequences: 438
Number of extensions: 4553
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)