Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d13
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    80   3e-16
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    41   2e-04
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    29   0.59 
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    29   0.78 
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    28   1.8  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   5.5  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      26   7.3  
SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit L2...    26   7.3  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            25   9.6  
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.6  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   9.6  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   9.6  

>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 12/184 (6%)
 Frame = +2

Query: 125 LTENIANISLHEEQTAKKRNDYID-------WQEYFMAVAFLAAKRSKDPKTQVGACIVN 283
           L  N +NI LH  +  +K  D ++       W  YFM +A LAAKRS   K +VG C++ 
Sbjct: 170 LINNDSNIKLHLWEKLQKA-DLLNPNRFRPSWDSYFMEMASLAAKRSNCMKRRVG-CVLV 227

Query: 284 NDNKIVGIGYNGMPIG---CNDDDFPWGKNTPSPLDSKYLYVC-HAEMNAILNKNSADV- 448
             N+++  GYNG P G   CN+   P   +  S        +C HAE NA+L      V 
Sbjct: 228 RGNRVIATGYNGTPRGATNCNEGGCPRCNSASSCGKELDTCLCLHAEENALLEAGRERVG 287

Query: 449 KDCTIYVGLFPCNECAKMIIQSGIKKVVYLSDKNAHRPEYIASKKMFNASNIIYKQYKPR 628
            +  +Y    PC  C+  I Q GIK+VVY +  N     + AS  +  A+ +  +QY P 
Sbjct: 288 NNAILYCDTCPCLTCSVKITQLGIKEVVYHTSYN--MDSHTAS--LLQAAGVQLRQYIPP 343

Query: 629 RSKI 640
            + I
Sbjct: 344 ENSI 347


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
 Frame = +2

Query: 404 HAEMNAI--LNKNSADVKDCTIYVGLFPCNECAKMIIQSGIKKVVY-LSDKN 550
           HAE  A+  + K   D++ CT+Y    PC  C+  I  SGI+++++ LS++N
Sbjct: 59  HAETRAVGLITKTRRDLEKCTLYTSTEPCAMCSGAIFWSGIRRMIFGLSNEN 110


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +2

Query: 374 PLDSKYLYVCHAEMNAI---LNKNSADV-KDCTIYVGLFPCNECAKMIIQSGIKKVVY 535
           PL +    + HAE+ AI   L    A V K+ T+YV + PC  CA  + Q  IK V +
Sbjct: 234 PLLTMIKGIRHAELIAIEKILEHYPASVFKETTLYVTVEPCLMCAAALKQLHIKAVYF 291


>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 419 HSFLHDIHKGICYLVVMECSFPRESRHHY 333
           ++F + I  GICYL + E S+PR+    Y
Sbjct: 51  YTFHYLIDNGICYLCICEQSYPRKLAFSY 79


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
 Frame = +2

Query: 476 FPCNECAKMIIQSGIK---KVVYLSD-KNAHRPEYIASKKMFNASNIIYKQYKP--RRSK 637
           F C++C K II S  K   + ++ +D K    P   + +     +  +    KP   +S 
Sbjct: 102 FRCHDCRKQIIDSNFKRDNRTIFCNDCKQVRHPSRSSDESADYHNFEVDVTIKPTETKSS 161

Query: 638 IEINFDIDWDLVSPTK 685
           +E N  +  +++SP K
Sbjct: 162 VESNKSLSIEIMSPQK 177


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -3

Query: 661 VNVEIYFNFTSPWFVLFIYYIG-SIKHLL*CNVLRPMCIFV**IYHLF-NTRLYDHFCTF 488
           ++ +++F    PWF+LF   +G +++       + P  +FV   ++L+ N          
Sbjct: 205 LDFKMFFEVRIPWFILFFISVGAAVRQYETYGTVSPQVLFVCLGHYLYANACSKGEQLIV 264

Query: 487 VTWKQSY 467
            TW  +Y
Sbjct: 265 PTWDMAY 271


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 732 TFNYQKLIENMYSQNACILITKS 800
           T+ +Q+L+ +MY QN C+ I  S
Sbjct: 516 TWYHQQLLSSMYPQNECVEILVS 538


>SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit
           L22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 479 PCNECAKMIIQSGIKKVVYLSDKNAHRPEYIASKKM 586
           P      M+++S +KKV  L  + AH+P Y A  +M
Sbjct: 103 PSYTLQSMVLRSSLKKVGALCRQIAHKPFYHALLQM 138


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -3

Query: 514 RLYDHFCTFVTW--KQSYIDC 458
           R++ H C F+TW  K +YI C
Sbjct: 5   RVFKHPCQFLTWNSKHNYIVC 25


>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = -3

Query: 535 IYHLFNTRLYDHFCTFVTWKQSYIDCAVFDICRVFIQYCIHFCMTYI 395
           + H+     Y   C F  W++    C++F +    IQ  I   ++Y+
Sbjct: 131 LIHISGEDKYKVLCLFSIWRRKLGKCSIFTVHDPDIQKKIKSILSYL 177


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 566 YIASKKMFNASNIIYKQYKPRRSKIEINFDIDWDLVSPTK 685
           Y  +K +F+ S+++Y   +       I+FD  + LVS  K
Sbjct: 98  YNLNKTLFSVSDLVYNGIQLDYDSYSISFDAKYVLVSVNK 137


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -3

Query: 499 FCTFVTWKQSYIDCAVFDICRVFIQYCIHFCMTYI 395
           FC F TW Q+   C    +  +F+  C+   + ++
Sbjct: 137 FCFFETWTQAVAQC--IKVTVIFLAQCVKVTVIFL 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,380,268
Number of Sequences: 5004
Number of extensions: 76231
Number of successful extensions: 188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)