Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d13
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0821 - 32230056-32230097,32230298-32230356,32231159-322311...   102   4e-22
01_06_0820 - 32226661-32226759,32226837-32226938,32227238-322272...    87   2e-17
07_01_0967 + 8107896-8107952,8108533-8108542,8109187-8109246,810...    31   0.82 
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630...    31   0.82 
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    30   1.9  
03_06_0575 - 34828347-34828535,34828619-34828723,34829425-348296...    30   1.9  

>01_06_0821 -
           32230056-32230097,32230298-32230356,32231159-32231198,
           32231805-32231880,32231985-32232199
          Length = 143

 Score =  102 bits (244), Expect = 4e-22
 Identities = 43/74 (58%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
 Frame = +2

Query: 176 KRNDYIDWQEYFMAVAFLAAKRSKDPKTQVGACIVNNDNKIVGIGYNGMPIGCNDDDFPW 355
           KR  YI W +YFMA+AFL+AKRSKDP  QVGAC+V+ +  I+GIGYNG P GC+D+  PW
Sbjct: 69  KREGYISWDDYFMAIAFLSAKRSKDPNRQVGACLVSQEGIILGIGYNGFPRGCSDNKLPW 128

Query: 356 GKNTP--SPLDSKY 391
            K +    PL++KY
Sbjct: 129 AKKSAKGDPLETKY 142


>01_06_0820 -
           32226661-32226759,32226837-32226938,32227238-32227291,
           32227383-32227446,32227798-32228033
          Length = 184

 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 39/88 (44%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
 Frame = +2

Query: 395 YVCHAEMNAILNKNSADVKDCTIYVGLFPCNECAKMIIQSGIKKVVYLSDKNAHRPE--Y 568
           YV HAE+NAILN N A      +YV +FPCNECAK+IIQSG+ +V+Y  +K     +  Y
Sbjct: 80  YVVHAEVNAILNTNHASAAGQKLYVTMFPCNECAKIIIQSGVSEVIYFVEKRIDNSDYVY 139

Query: 569 IASKKMFNASNIIYKQYKPRRSKIEINF 652
           +AS K+ + + +  ++++P+ S+I I F
Sbjct: 140 VASHKLLSMAGVKVRKHQPQMSQIPIKF 167


>07_01_0967 +
           8107896-8107952,8108533-8108542,8109187-8109246,
           8109389-8109579,8109731-8109835,8109923-8110111
          Length = 203

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +2

Query: 404 HAEMNAILNK----NSADVKDCTIYVGLFPCNECAKMIIQSGIKKVVY 535
           HAE+ AI          ++ DC IY    PC  C   +  S IK++VY
Sbjct: 98  HAEVTAIREACKKLGKIELSDCEIYASCEPCPMCFGAVHLSRIKRLVY 145


>03_06_0646 + 35260497-35262371,35262500-35262683,35262906-35263007,
            35263101-35263231,35263315-35263584,35263765-35263943,
            35264229-35264275,35264452-35264541,35264596-35264645,
            35264673-35264725,35264886-35265009,35265094-35265369,
            35265460-35265593,35265672-35265758,35265864-35265977,
            35266180-35266309
          Length = 1281

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 179  RNDYIDWQEYFMAVAFLAAKRSKDPKTQVGACIVNNDNKIVGIGYNGMPIG 331
            R D +DW        FL     K  K  +G  +V+ + K++G+ +    IG
Sbjct: 1102 RTDVVDWSGTLDCEMFLIRSSCKITKAGIGGPLVDLEGKVIGMNFYDKKIG 1152


>06_03_0099 + 16633928-16638213,16638299-16638386,16638823-16638950,
            16640008-16640278
          Length = 1590

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 452  DCTIYVGLFPCNECAKMIIQSGIKKVVY 535
            D T+YV L PC  CA  I+Q+ +  VV+
Sbjct: 1459 DTTLYVTLEPCAMCAGAILQARVDTVVW 1486


>03_06_0575 -
           34828347-34828535,34828619-34828723,34829425-34829615,
           34829747-34829806,34829975-34830104,34830374-34830448,
           34830598-34830608,34830722-34830737
          Length = 258

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +2

Query: 404 HAEMNAILNK----NSADVKDCTIYVGLFPCNECAKMIIQSGIKKVVY 535
           HAE+ AI          ++ DC +Y    PC  C   +  S IK++VY
Sbjct: 153 HAEVTAIREACKKLGKIELSDCEMYASCEPCPMCFGAVHLSRIKRLVY 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,957,545
Number of Sequences: 37544
Number of extensions: 426375
Number of successful extensions: 884
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)