Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d13
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11126-2|CAA77473.1|  197|Caenorhabditis elegans Hypothetical pr...   152   2e-37
Z82274-2|CAB05231.1|  176|Caenorhabditis elegans Hypothetical pr...    34   0.10 
U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    24   4.4  
Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AF101315-5|AAM34816.1|  457|Caenorhabditis elegans Hypothetical ...    29   5.2  
Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.    28   6.9  
Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical p...    28   6.9  
AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical ...    28   6.9  
U49829-4|AAK68350.1|  427|Caenorhabditis elegans Dehydrogenases,...    28   9.1  
AF125442-9|AAD12788.1|  333|Caenorhabditis elegans Hypothetical ...    28   9.1  
AF063007-5|AAD47125.1|  712|Caenorhabditis elegans Prion-like-(q...    28   9.1  

>Z11126-2|CAA77473.1|  197|Caenorhabditis elegans Hypothetical
           protein ZK643.2 protein.
          Length = 197

 Score =  152 bits (369), Expect = 2e-37
 Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 3/168 (1%)
 Frame = +2

Query: 122 DLTENIANISLHEEQTAKK---RNDYIDWQEYFMAVAFLAAKRSKDPKTQVGACIVNNDN 292
           +L   +  + ++    AKK    N  +   + F+ +A + + RSKDP TQVG  IV+ DN
Sbjct: 22  NLHTTLERLKININSDAKKLVDTNGDLKKHQRFLRIAKVTSLRSKDPNTQVGCVIVDKDN 81

Query: 293 KIVGIGYNGMPIGCNDDDFPWGKNTPSPLDSKYLYVCHAEMNAILNKNSADVKDCTIYVG 472
            IV +GYNG PIG +DD F W K  P   D+K+LYV HAEMNAI+NK    + DCT+YV 
Sbjct: 82  CIVSVGYNGFPIGVDDDVFRWDKEDPE--DNKHLYVVHAEMNAIINKRCTTLHDCTVYVT 139

Query: 473 LFPCNECAKMIIQSGIKKVVYLSDKNAHRPEYIASKKMFNASNIIYKQ 616
           LFPCN+CA+M+IQS +KKV +L  +N     + ASKKM + + + Y+Q
Sbjct: 140 LFPCNKCAQMLIQSRVKKVYFL--ENRDELAFRASKKMLDHARLPYEQ 185


>Z82274-2|CAB05231.1|  176|Caenorhabditis elegans Hypothetical
           protein JC8.4 protein.
          Length = 176

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 446 VKDCTIYVGLFPCNECAKMIIQSGIKKVVY 535
           +K  T+YV L PC  C+  + Q GI+K+VY
Sbjct: 80  LKKSTLYVSLEPCIMCSSAMYQLGIRKMVY 109


>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 24.2 bits (50), Expect(2) = 4.4
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 272 MRRLAFWDLCCVLP 231
           +++LAFW +C V+P
Sbjct: 354 LKKLAFWRVCLVVP 367



 Score = 23.0 bits (47), Expect(2) = 4.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 329 LLAFHYNLCRLFYYHY*LCMRRLAFWDL 246
           +L F Y LCR  +Y        L FW++
Sbjct: 292 ILMFAYMLCRYPFYSSYDSTSSLGFWEM 319


>Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical
           protein F01D4.7 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 341 HHYNLLAFHYNLCRLFYYHY*LCMRRLA 258
           ++ NLLAFH+N+  LF++ +  C  + A
Sbjct: 49  NYSNLLAFHFNIKILFFFQFCSCFLQSA 76


>AF101315-5|AAM34816.1|  457|Caenorhabditis elegans Hypothetical
           protein T22H9.1 protein.
          Length = 457

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 521 KKVVYLSDKNAHRPEYIASKKMFNASNIIYKQYKPRRSK 637
           KK    +DK  HRP  ++SK+  +A   IY  ++  + K
Sbjct: 268 KKAAEKADKGQHRPREMSSKRPVSAFRNIYGGHEQEKKK 306


>Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 532 YHLFNTRLYDHF--CTFVTWKQSYIDCAVFDICRVFI 428
           + + NT++ + +  C  V  K  ++DC+  DIC+ F+
Sbjct: 235 WDILNTQIIEQYLECGMVLPKLKFLDCSGTDICQYFL 271


>Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 532 YHLFNTRLYDHF--CTFVTWKQSYIDCAVFDICRVFI 428
           + + NT++ + +  C  V  K  ++DC+  DIC+ F+
Sbjct: 235 WDILNTQIIEQYLECGMVLPKLKFLDCSGTDICQYFL 271


>AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 532 YHLFNTRLYDHF--CTFVTWKQSYIDCAVFDICRVFI 428
           + + NT++ + +  C  V  K  ++DC+  DIC+ F+
Sbjct: 235 WDILNTQIIEQYLECGMVLPKLKFLDCSGTDICQYFL 271


>U49829-4|AAK68350.1|  427|Caenorhabditis elegans Dehydrogenases,
           short chain protein29 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 721 LINLIVIYKQP-LFCWANQIPVNVEIYFNFTSPWFVLFIYYIGSIKH 584
           LI +   YK P LF W   +P     Y ++  P   L I  IGS+ H
Sbjct: 310 LIEMSDYYKTPQLFWWLLIVPALAINYISYAHPAAALNIPLIGSLVH 356


>AF125442-9|AAD12788.1|  333|Caenorhabditis elegans Hypothetical
           protein H04M03.3 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 533 YLSDKNAHRPEYIASKKMFNASNIIYKQYKPR 628
           Y +DK++  PE I S+K   A   +++Q+K R
Sbjct: 301 YKTDKSSKLPELICSEKSIAAFEQVFEQFKIR 332


>AF063007-5|AAD47125.1|  712|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 59
           protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 572 ASKKMFNASNIIYKQYKPRRSKIEINFDIDWDLVSP 679
           AS+ +FN+S I+ KQ +P R+ I  N D +    SP
Sbjct: 402 ASENIFNSSRIMPKQVEPERTSIP-NGDYNLKSTSP 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,616,534
Number of Sequences: 27780
Number of extensions: 434959
Number of successful extensions: 1025
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)